View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_high_13 (Length: 431)
Name: NF19618_high_13
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 15666376 - 15666633
Alignment:
| Q |
23 |
cctgaaaccaatcattcataacataaattcctactaaatatggataagatctatttgtttctgaaaagctgctaaagatttcttcctaagtggttttcat |
122 |
Q |
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| T |
15666376 |
cctgaaaccaatcattcataacataaattcctactaaatatggataagatctatttgtttctgaaaagcagctagagatttcgtcctaagtggttttcat |
15666475 |
T |
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| Q |
123 |
aactcttgttattcctctattttcagcataaaatttttctttctacttctcttgaaaatacaatacaagcattttaactgaatttcaagattaatttaga |
222 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15666476 |
aactcttgttattcctctattttcagcataaagtttttctttctacttctcttgaaaatacaatacaagcattttaactgaatttcaagattaatttaga |
15666575 |
T |
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| Q |
223 |
aacatcttttttgacaacagagaaactatatattagctagatgactggaaaagctttg |
280 |
Q |
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| T |
15666576 |
aacatctttttggacaacagagaaactatatattagctagatgactggaaaagctttg |
15666633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 15666692 - 15666769
Alignment:
| Q |
338 |
gaagatccttttactttggtccatcttcaacaagattcttaacaaaacaagaacaatcaataaaataaatagagagaa |
415 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15666692 |
gaagatccttttactttggtccatctccaacaggattcttaacaaaacaagaacaatcaataaaataaatagagagaa |
15666769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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