View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_high_17 (Length: 402)
Name: NF19618_high_17
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 9661268 - 9660888
Alignment:
| Q |
16 |
attgtttctcatataacaggtacatataatataagatatttttaagtcaaagagttaaacatatactaaaaatttatgcttaaccaatttcctgcaatta |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9661268 |
attgtttctcatttaacaggtacatataatataagatatttttaagtcaaagagttaaacatatactaaaaatttatgcttaaccaatttcctgcaatta |
9661169 |
T |
|
| Q |
116 |
gttatcttatcacagttgttgataaaggttgaatagttgaaatttcgagtttctgactggtcaaagtcatgatgtaagccatttgagcttcatcaatgta |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9661168 |
gttgtcttatcacagttgttgataaaggttgaatagttaaaatttcgagtttctgactggtcaaagtcatgatgtaagccatttgatcttcatcaatgta |
9661069 |
T |
|
| Q |
216 |
gcaatggcttagatagactgactgcgacgacaataaggaattttgactgctgagaatccgcgacgacaataaggatttttgactgctgagaatccgaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9661068 |
gcaatggcttagatagactgactgcgacgacaataaggaattttgactgctgagaatccgcgacgacaataaggatttttgactgctgagaatccgaatt |
9660969 |
T |
|
| Q |
316 |
gaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttct |
396 |
Q |
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| T |
9660968 |
gaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttct |
9660888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 9676778 - 9676595
Alignment:
| Q |
32 |
caggtacatataatata--agatatttttaagtcaaagagttaaacatatactaaaaatttatgcttaaccaatttcctgcaattagttatcttatcaca |
129 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||| |||||||||| |
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| T |
9676778 |
caggtacatataatatataagatatttataagtcaaagagttaaacatatacttaaaatttatgcaaaactaatttcctgcagttagttgtcttatcaca |
9676679 |
T |
|
| Q |
130 |
gttgttgataaaggttgaatagttgaaatttcgagtttctgactggtcaaagtcatgatgtaagccatttgagcttcatcaatg |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9676678 |
gttgttgataaaggtttaatagttgaaatttcgagtttcagattggtcaaagtcatgatgtaagccatttgatcttcatcaatg |
9676595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 39 - 213
Target Start/End: Complemental strand, 9678245 - 9678071
Alignment:
| Q |
39 |
atataatataagatatttttaagtcaaagagttaaacatatactaaaaatttatgcttaaccaatttcctgcaattagttatcttatcacagttgttgat |
138 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||| |
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| T |
9678245 |
atataatataaaatatttttaagtcaaagagttaaacatatacttaaaatttatgcaaaatgaatttcctgcagttagttatcttatcacagttgttgat |
9678146 |
T |
|
| Q |
139 |
aaaggttgaatagttgaaatttcgagtttctgactggtcaaagtcatgatgtaagccatttgagcttcatcaatg |
213 |
Q |
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|||||||||||||||||||||| |||||| ||| ||||||||||| ||||||||||||||||| |||||| |||| |
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| T |
9678145 |
aaaggttgaatagttgaaattttgagtttttgattggtcaaagtcgtgatgtaagccatttgatcttcatgaatg |
9678071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 9678036 - 9677958
Alignment:
| Q |
313 |
attgaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagttt |
394 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| |
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| T |
9678036 |
attgaaagttgtggaaaacgagttccttgcaattagtgatctca---gtttataaagatcgaatgattgagattacgagttt |
9677958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 9676534 - 9676455
Alignment:
| Q |
317 |
aaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttct |
396 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||||||||| |||| ||||||||||| |||| ||||||| |
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| T |
9676534 |
aaagttgtggaaaaagagttccctgcaattagttatctcaattgtttatatagattgaatgattgagatttcaagtttct |
9676455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 394
Target Start/End: Complemental strand, 12107443 - 12107409
Alignment:
| Q |
360 |
gtttataaagatcgaatgattgaggtttcgagttt |
394 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
12107443 |
gtttataaagattgaatgattgaggtttcgagttt |
12107409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 9676502 - 9676434
Alignment:
| Q |
122 |
ttatcacagttgttgataaaggttgaatagttgaaatttcgagtttctgactggtcaaagtcatgatgt |
190 |
Q |
| |
|
||||| || ||||| ||| || |||||| |||| ||||| ||||||||| |||||||||||||||||| |
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| T |
9676502 |
ttatctcaattgtttatatagattgaatgattgagatttcaagtttctgattggtcaaagtcatgatgt |
9676434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 5503188 - 5503365
Alignment:
| Q |
16 |
attgtttctcatataacaggtacatata--atataagatatttttaagtcaaagagttaaacatatactaaaaatttatgcttaaccaatttcctgcaat |
113 |
Q |
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||||||| | ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||| |||| | |
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| T |
5503188 |
attgtttttgatacaacaggtacatatactatataagatatttt-aagtcaaagagttaaacatatacttaaaatttatgcgaaacgaatttcatgcagt |
5503286 |
T |
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| Q |
114 |
tagttatcttatcacagttgttgataaaggttgaatagttgaaatttcgagtttctgactggtcaaagtcatgatgtaagccat |
197 |
Q |
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||| |||| |||| || ||||||| | ||||||| || | |||||||| |||| ||| | ||||||||||| |||||| |
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| T |
5503287 |
cagtgatct-----cagtcgtcgataaagatcgaatagtagataattcgagttactgattggaaacagtcatgatgttagccat |
5503365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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