View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19618_high_19 (Length: 382)
Name: NF19618_high_19
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 1661280 - 1660926
Alignment:
| Q |
14 |
atatccaatgtcttttgatgttattattatatgaattgtacttgtacttacaacaccgatgtcaactactttatgaaatggtgaacaatttttattcaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1661280 |
atatccaatgtcttttgatgttattattatatgaatggtacttgtacttacaacaccaatgtcaactactttatgaaatggtgaacaatttttattcaaa |
1661181 |
T |
|
| Q |
114 |
gaaatattcaaacaatttcaataatgaatgtaaatttattgattctatcaaggaattaattcttttaaaaaatatctactttttaagagacgagtcagac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1661180 |
gaaatattcaaacaatttcaataatgaatgtaaatttattgattctatcaaggaattaattcttttaaaaaatatctactttttaatagacgagtcagac |
1661081 |
T |
|
| Q |
214 |
tccacgcccaacaggtatatgtaattgaataccatacatttgaacttgttttgttgatattaagaacaaacgattgatgatgaatataagatataaaact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1661080 |
tccacgcccaacaggtatatgtaattgaataccatacatttgaacttgttttgttgatattaagaacaaacgattgatgatgaatataagatataaaact |
1660981 |
T |
|
| Q |
314 |
ttcttgcataaaaataaatacaattcaatttttggtgttgtgtaagactttcttg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1660980 |
ttcttgcataaaaataaatacaattcaatttttggtgttgtgtaagactttcttg |
1660926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University