View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_high_28 (Length: 333)
Name: NF19618_high_28
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 37836638 - 37836322
Alignment:
| Q |
1 |
actataaaacaagctatttctattttagtatattctgaactctaaaattataaaacagattttaatttacaggttttaacaaaatcagagaatagccata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37836638 |
actataaaacaagctatttctattttagtatattctgaactctaaaattataaaacagattttaatttacaggttttaacaaaatcagagaatagccata |
37836539 |
T |
|
| Q |
101 |
catgtgctaggctgctagcaattgtttaaccctatgttgccatatagcctggtttaagtaagtgacnnnnnnnnnnnnnnnnnnnncatacacgaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37836538 |
catgtgctaggctgctagcaattgtttaaccctatgttgccatatagcctggtttaagtaagtgacaaaaacaaaattctaaaaaacatacacgaatcat |
37836439 |
T |
|
| Q |
201 |
aaaaacttagacaagtttagattaaatttaacttagatttcaaatgggctgtggcttttagctacttatgtttctaatcgtttatgctttgtcctattga |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37836438 |
aaaaacttagacaagtttagattaaatttaacttaaatttcaaatgggctgtggcttttagctacttatgtttctaatcgtttatgctttgtcctattga |
37836339 |
T |
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| Q |
301 |
tagtctcttctccacag |
317 |
Q |
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|||||||| |||||||| |
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| T |
37836338 |
tagtctctactccacag |
37836322 |
T |
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