View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_high_3 (Length: 713)

Name: NF19618_high_3
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_high_3
NF19618_high_3
[»] chr2 (1 HSPs)
chr2 (8-632)||(44144777-44145404)


Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Original strand, 44144777 - 44145404
Alignment:
Q  8 gacatcatcaatgcaaagaaacgttactgctaaaaggaaaacaagacaaagttaaaaggctccggggattagtgtttcttgcagctggttttgtagcacc 107  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  44144777 gacatcatcagtgcaaagaaacgtaactgctaaaaggaaaacaagacaaagttaaaaggctccggggattagtgtttcttggagctggtttggtagcacc 44144876  T
Q  108 accattctcctcatctgaaacacgagaaacatagatggcggtataagaacgctctataggataaattccagaagttccttgagatggttgagaggattac 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44144877 accattctcctcatctgaaacacaagaaacatagatggcggtataagaacgctctataggataaattccagaagttccttgagatggttgagaggattac 44144976  T
Q  208 tttcctcttatttgattgctagtagcctataaatcagctgtaatatacaaaaccaaatgtaccaagatctctgcagaactttgcaccataccctgaaagg 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44144977 tttcctcttatttgattgctaatagcctataaatcagctgtaatatacaaaaccaaatgtaccaagatctctgtagaactttgcaccataccctgaaagg 44145076  T
Q  308 gatttttaacttttcttatcctcattaggtaaccaacaacaaagattataattcttacattaaaaatcttgttacttcctaatcataaaacatgtttata 407  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44145077 gatttttaacttttcttatcctcattaggtaacaaacagcaaagattataattcatacattaaaaatcttgttacttcctaatcataaaacatgtttata 44145176  T
Q  408 acaatatataaagatcttattcttaaagaaaatgcccccagacttgaatgtaatgccaaaagatgtctaataagtaagacattgagttcagcataaaaag 507  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145177 acaatctataaagatcttattcttaaagaaaatgcccccagacttgaatgtaatgccaaaagatgtctaataagtaagacattgagttcagcataaaaag 44145276  T
Q  508 aaacagatataatatgaagaaagatgacattagga---aataaatatatgcttacaaacagttaagtaacactcaaactctgaaaactttaattcaaagt 604  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44145277 aaacagatataatatgaagaaagatgacattaggaaataataaatatatgcttacaaacagctaagtaacactcaaactctgaaaactttaattcaaagt 44145376  T
Q  605 caagcaaccacccacaacgcatcattac 632  Q
    ||||||||||| ||||||||||||||||    
T  44145377 caagcaaccacacacaacgcatcattac 44145404  T

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