View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_high_40 (Length: 244)
Name: NF19618_high_40
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 26532005 - 26532242
Alignment:
| Q |
7 |
aaaattaagatattttcatttctctcgtgacataataattttcacttccctacaatttttgtcnnnnnnnatttcaattattactaatcccccctacaca |
106 |
Q |
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| T |
26532005 |
aaaattaagatattttcatttctctcgtgacataataattttcacttccctacaatttttgtccttttttatttcaattattactaatcccccctacaca |
26532104 |
T |
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| Q |
107 |
ttcacaccataacnnnnnnnnnnnnntgaacgtgtaggttcacatggtcaacaagaacaagaaatgcacctgattaaaccactctcattacaatccatac |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26532105 |
ttcacaccataacaaaaaaacaaaaatgaacgtgtaggttcacatggtcaacaagaacaagaaatgcacctgattaaaccactctcattacaatccatac |
26532204 |
T |
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| Q |
207 |
aagtcttaaacccacctttctccgcatacaccttacgc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26532205 |
aagtcttaaacccacctttctccgcatacaccttacgc |
26532242 |
T |
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