View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_high_49 (Length: 213)

Name: NF19618_high_49
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_high_49
NF19618_high_49
[»] chr8 (19 HSPs)
chr8 (1-213)||(38871656-38871868)
chr8 (27-100)||(22577635-22577708)
chr8 (5-125)||(3395837-3395957)
chr8 (20-131)||(18438573-18438684)
chr8 (20-131)||(7168027-7168138)
chr8 (20-131)||(41858144-41858255)
chr8 (30-126)||(43690067-43690162)
chr8 (20-131)||(41855307-41855418)
chr8 (26-131)||(18441470-18441575)
chr8 (20-68)||(28646270-28646318)
chr8 (20-68)||(28650854-28650902)
chr8 (2-52)||(37779696-37779746)
chr8 (20-130)||(42602400-42602510)
chr8 (1-37)||(18441419-18441455)
chr8 (1-35)||(26451541-26451575)
chr8 (1-42)||(22547497-22547538)
chr8 (20-61)||(35940448-35940489)
chr8 (78-131)||(40077331-40077384)
chr8 (26-54)||(42605263-42605291)
[»] chr4 (28 HSPs)
chr4 (26-127)||(955735-955836)
chr4 (1-131)||(34154406-34154536)
chr4 (20-131)||(21472507-21472618)
chr4 (20-129)||(49572923-49573032)
chr4 (20-131)||(29700325-29700436)
chr4 (1-54)||(6283445-6283498)
chr4 (20-131)||(37959743-37959854)
chr4 (5-87)||(39588075-39588157)
chr4 (30-131)||(51426476-51426577)
chr4 (26-131)||(51644502-51644608)
chr4 (26-131)||(4768617-4768722)
chr4 (27-131)||(49422082-49422181)
chr4 (20-127)||(958617-958723)
chr4 (20-131)||(4979940-4980051)
chr4 (6-53)||(37865185-37865232)
chr4 (1-131)||(56304816-56304945)
chr4 (20-69)||(34151615-34151664)
chr4 (1-42)||(51429307-51429348)
chr4 (22-66)||(24414839-24414883)
chr4 (5-41)||(34530777-34530813)
chr4 (28-131)||(44051123-44051226)
chr4 (28-131)||(44561361-44561464)
chr4 (26-100)||(18578619-18578693)
chr4 (1-35)||(56138313-56138347)
chr4 (20-125)||(33383750-33383855)
chr4 (28-68)||(9473692-9473732)
chr4 (28-68)||(17342144-17342184)
chr4 (27-75)||(24417446-24417494)
[»] chr5 (20 HSPs)
chr5 (20-131)||(34682196-34682307)
chr5 (20-131)||(18538358-18538469)
chr5 (20-131)||(20192292-20192403)
chr5 (20-131)||(20200171-20200282)
chr5 (28-131)||(3603179-3603282)
chr5 (20-93)||(18307231-18307304)
chr5 (26-131)||(18310050-18310155)
chr5 (1-54)||(42865782-42865835)
chr5 (20-106)||(8702221-8702307)
chr5 (1-35)||(35564322-35564356)
chr5 (26-131)||(19228675-19228780)
chr5 (26-131)||(24053119-24053224)
chr5 (1-35)||(542768-542802)
chr5 (1-35)||(18307315-18307349)
chr5 (20-126)||(38968039-38968145)
chr5 (78-131)||(3600275-3600328)
chr5 (26-66)||(6267997-6268038)
chr5 (20-57)||(24050040-24050077)
chr5 (20-57)||(25497524-25497561)
chr5 (20-93)||(42539396-42539469)
[»] chr1 (31 HSPs)
chr1 (20-131)||(41804056-41804167)
chr1 (6-125)||(35527022-35527141)
chr1 (20-131)||(46973143-46973254)
chr1 (20-131)||(11183125-11183236)
chr1 (1-57)||(14174889-14174945)
chr1 (20-131)||(13173775-13173885)
chr1 (20-131)||(18975143-18975254)
chr1 (28-131)||(19053998-19054101)
chr1 (20-131)||(46141721-46141832)
chr1 (30-131)||(35521553-35521654)
chr1 (28-131)||(6437570-6437673)
chr1 (21-127)||(36908521-36908627)
chr1 (20-93)||(13178155-13178228)
chr1 (1-61)||(27487644-27487704)
chr1 (20-131)||(23276131-23276242)
chr1 (20-127)||(36076581-36076687)
chr1 (20-131)||(36072309-36072419)
chr1 (20-131)||(13972003-13972112)
chr1 (21-131)||(49857873-49857981)
chr1 (20-127)||(51666662-51666768)
chr1 (20-131)||(26633469-26633577)
chr1 (1-42)||(49426741-49426782)
chr1 (26-121)||(27485008-27485103)
chr1 (20-131)||(49924795-49924906)
chr1 (26-68)||(4516033-4516075)
chr1 (26-68)||(27115852-27115894)
chr1 (1-35)||(29763197-29763231)
chr1 (1-35)||(42572735-42572769)
chr1 (1-35)||(49395664-49395698)
chr1 (20-100)||(19499135-19499213)
chr1 (5-38)||(44596893-44596926)
[»] chr3 (35 HSPs)
chr3 (20-131)||(29929365-29929476)
chr3 (20-131)||(29978519-29978630)
chr3 (20-131)||(30256026-30256137)
chr3 (1-131)||(19454329-19454459)
chr3 (26-131)||(43571714-43571819)
chr3 (27-131)||(7247890-7247994)
chr3 (20-131)||(41579747-41579858)
chr3 (21-131)||(45101872-45101982)
chr3 (20-127)||(46344880-46344987)
chr3 (20-131)||(28611123-28611234)
chr3 (28-130)||(66841-66942)
chr3 (27-100)||(2745235-2745308)
chr3 (78-131)||(41577014-41577067)
chr3 (26-87)||(50216883-50216944)
chr3 (26-127)||(55207692-55207793)
chr3 (19-131)||(11380380-11380492)
chr3 (20-131)||(29918364-29918475)
chr3 (20-131)||(29967517-29967628)
chr3 (28-131)||(52570597-52570699)
chr3 (1-35)||(2271291-2271325)
chr3 (1-35)||(34694412-34694446)
chr3 (1-35)||(36134384-36134418)
chr3 (53-131)||(43568865-43568942)
chr3 (1-35)||(45101826-45101860)
chr3 (1-35)||(55207641-55207675)
chr3 (20-93)||(41137695-41137768)
chr3 (20-93)||(41802975-41803048)
chr3 (26-127)||(42804398-42804499)
chr3 (78-131)||(42807681-42807734)
chr3 (2-35)||(43568927-43568960)
chr3 (2-35)||(51402377-51402410)
chr3 (30-131)||(55267380-55267481)
chr3 (25-73)||(20366189-20366237)
chr3 (28-68)||(50604451-50604491)
chr3 (27-127)||(51402428-51402528)
[»] chr6 (15 HSPs)
chr6 (22-131)||(13479665-13479774)
chr6 (20-128)||(35021286-35021394)
chr6 (20-127)||(13401429-13401536)
chr6 (26-113)||(23986010-23986097)
chr6 (1-68)||(29061298-29061365)
chr6 (26-131)||(18001153-18001257)
chr6 (79-131)||(32026044-32026096)
chr6 (20-131)||(18605984-18606094)
chr6 (20-131)||(23958829-23958940)
chr6 (20-131)||(29286168-29286279)
chr6 (31-113)||(12783991-12784073)
chr6 (26-136)||(13404661-13404771)
chr6 (1-42)||(32034370-32034411)
chr6 (1-35)||(12783935-12783969)
chr6 (28-88)||(7537180-7537240)
[»] chr7 (22 HSPs)
chr7 (1-68)||(21188404-21188471)
chr7 (20-131)||(30355262-30355373)
chr7 (20-131)||(9494829-9494940)
chr7 (20-131)||(36392064-36392175)
chr7 (26-131)||(46863373-46863478)
chr7 (28-131)||(48314613-48314715)
chr7 (26-131)||(10705187-10705292)
chr7 (20-128)||(47060869-47060976)
chr7 (27-131)||(34622438-34622542)
chr7 (20-131)||(41049212-41049322)
chr7 (80-131)||(48269620-48269671)
chr7 (33-135)||(48316296-48316398)
chr7 (20-131)||(42681933-42682044)
chr7 (28-124)||(46860457-46860553)
chr7 (20-131)||(27453617-27453728)
chr7 (1-88)||(34139879-34139966)
chr7 (20-131)||(41047717-41047827)
chr7 (1-35)||(30355217-30355251)
chr7 (1-35)||(41047838-41047872)
chr7 (66-127)||(41623884-41623945)
chr7 (20-88)||(34623403-34623471)
chr7 (20-68)||(39460555-39460603)
[»] scaffold0388 (1 HSPs)
scaffold0388 (22-127)||(11735-11840)
[»] chr2 (21 HSPs)
chr2 (20-131)||(2917622-2917733)
chr2 (20-131)||(19186686-19186797)
chr2 (20-131)||(35493364-35493475)
chr2 (20-127)||(45475383-45475490)
chr2 (20-125)||(34921782-34921886)
chr2 (20-127)||(41181380-41181487)
chr2 (28-131)||(8268780-8268883)
chr2 (26-113)||(43493286-43493373)
chr2 (26-93)||(45137462-45137529)
chr2 (26-68)||(36255019-36255061)
chr2 (20-130)||(43950265-43950374)
chr2 (20-68)||(23409524-23409572)
chr2 (1-37)||(29093806-29093842)
chr2 (20-127)||(9660078-9660185)
chr2 (1-35)||(2920494-2920528)
chr2 (1-35)||(24512228-24512262)
chr2 (12-42)||(28472141-28472171)
chr2 (1-35)||(41500212-41500246)
chr2 (26-127)||(12905492-12905593)
chr2 (1-34)||(40679575-40679608)
chr2 (23-67)||(35490683-35490727)
[»] scaffold0618 (1 HSPs)
scaffold0618 (20-57)||(3898-3935)
[»] scaffold0360 (1 HSPs)
scaffold0360 (26-126)||(7333-7433)
[»] scaffold0188 (1 HSPs)
scaffold0188 (80-131)||(27382-27433)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-88)||(804-891)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-35)||(12366-12400)
[»] scaffold0219 (2 HSPs)
scaffold0219 (27-68)||(20142-20183)
scaffold0219 (20-88)||(15685-15753)
[»] scaffold0169 (1 HSPs)
scaffold0169 (20-57)||(1680-1717)
[»] scaffold0201 (1 HSPs)
scaffold0201 (20-68)||(22405-22453)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 38871868 - 38871656
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    |||||||||||||||||||||||  |||||||||||||  |||||| ||||||||||  |||||||||||||||| ||||||||||||||||| ||||||    
T  38871868 ccagatttgtagcagaagatccttggcagttaactgcaatcgatttatgaattcctcgacaattaactaccaatgaagcaaaaacgtattttacttgtgt 38871769  T
Q  101 acctcagctttataaaatgtgtcaacaacaaatcttcaacaattaatcagtggtcctggagtgttgcagctctggcctttgttctataattacctgtgat 200  Q
     |||||   |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38871768 gcctcaatcttatgaaatgtgtcaacaataaatctccaacaattaatcagtggtcctggagtgttgcagctctggcctttgttctataattacctgtgat 38871669  T
Q  201 aaagtcagcaaca 213  Q
    |||||||||||||    
T  38871668 aaagtcagcaaca 38871656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 22577708 - 22577635
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    |||||||||||| || |||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||    
T  22577708 cagttaactgcaaccaatttttgaattcctcagcaattaactgccgagggaacaaaaacgtattttatttgtgt 22577635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 3395957 - 3395837
Alignment:
Q  5 atttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacct 104  Q
    |||||||||||||||||||| |||||||||||||  | |||||| |||||||| ||| |||||| |  | || |||||||| ||||||| |||||| |||    
T  3395957 atttgtagcagaagatcctcggcagttaactgcaatcaatttttaaattcctcggcagttaactgctgagggggcaaaaacatattttacttgtgtgcct 3395858  T
Q  105 cagctttataaaatgtgtcaa 125  Q
    || | |||| |||||||||||    
T  3395857 caaccttatgaaatgtgtcaa 3395837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 18438684 - 18438573
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| || |||||||||||| || |||||| || | || |||||| ||||||||| |||||| | ||||| ||||  ||||    
T  18438684 tcctcggcagttaactgcagccggttattgaattcctcaacagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatg 18438585  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  18438584 tgtcaacaacaa 18438573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 7168138 - 7168027
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||||||||| || |||  ||||   | | || |||||| ||||||||| |||||| ||||||| |||| |||||    
T  7168138 tcctcggcagttaactgcagccggtttttgaattcttcggcagctaacagtcgagggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatg 7168039  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  7168038 tgtcaacaacaa 7168027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 41858144 - 41858255
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||||||||| ||  || |||||| || | || |||||||||||||||| | ||||  ||||||  ||| |||||    
T  41858144 tcctcggcagttaactgcagccggtttttgaattcttcgccagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaatg 41858243  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41858244 tgtcaacaacaa 41858255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 43690067 - 43690162
Alignment:
Q  30 ttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaac 126  Q
    ||||||||||||||||||  ||||| |||| | ||||||||| |  |||||||||||||||||| |||| ||| ||||| |||| ||||||||||||    
T  43690067 ttaactgcagccgatttta-aattcatcagtagttaactaccgagagagcaaaaacgtattttacttgtatacttcagccttatgaaatgtgtcaac 43690162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 41855418 - 41855307
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||||||||||||||| ||  || |||||| || | |  |||||||||||||||| |  |||  ||||||  ||| |||||    
T  41855418 tcctcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttactcatgtttctcagccatatgaaatg 41855319  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41855318 tgtcaacaacaa 41855307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 18441470 - 18441575
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||||||| ||  || || ||||||| ||| ||| |||||| || | || |||||||||||||||| ||||||  |||||| |||| |||||||||||    
T  18441470 gcagttaactacaatcggttattgaatttctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaa 18441569  T
Q  126 caacaa 131  Q
    ||||||    
T  18441570 caacaa 18441575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 28646270 - 28646318
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  28646270 tcctcggcagttaactgcagccgatttttaaattcctcggcaattaact 28646318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 28650854 - 28650902
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  28650854 tcctcggcagttaactgcagccgatttttaaattcctcggcaattaact 28650902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37779746 - 37779696
Alignment:
Q  2 cagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaat 52  Q
    |||||||||||||||| ||||||  ||||||||||||||| ||||||||||    
T  37779746 cagatttgtagcagaatatcctcgacagttaactgcagcccatttttgaat 37779696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 42602510 - 42602400
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||| ||| ||||||||||| || ||| |||||| || || || |||||| |||||||| | ||||  ||||||  ||| ||| |    
T  42602510 tcctcggcagttaactgcatccggtttttgaattcttcggcagttaactgccgatagaacaaaaatgtattttactcgtgtttctcagccatatgaaacg 42602411  T
Q  120 tgtcaacaaca 130  Q
    |||||||||||    
T  42602410 tgtcaacaaca 42602400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18441419 - 18441455
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18441419 ccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26451575 - 26451541
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26451575 ccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22547538 - 22547497
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccg 42  Q
    |||||||||||| ||||||||||| | |||||||||||||||    
T  22547538 ccagatttgtagtagaagatcctcggtagttaactgcagccg 22547497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 35940489 - 35940448
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagca 61  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  35940489 tcctcggcagttaactgcagctgattattgaattcctcagca 35940448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 40077331 - 40077384
Alignment:
Q  78 gcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    |||||||||||||||| | ||||  |||||| |||| |||||||||||||||||    
T  40077331 gcaaaaacgtattttactcgtgtttctcagccttatcaaatgtgtcaacaacaa 40077384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 42605263 - 42605291
Alignment:
Q  26 gcagttaactgcagccgatttttgaattc 54  Q
    |||||||||||||||||||||||||||||    
T  42605263 gcagttaactgcagccgatttttgaattc 42605291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 955836 - 955735
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| |  |||||||||||||||| |||||| ||||| |||||| |||||||||||    
T  955836 gcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtattttacttgtgtgcctcaactttatgaaatgtgtcaa 955737  T
Q  126 ca 127  Q
    ||    
T  955736 ca 955735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34154406 - 34154536
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||| |||||| || ||||  |||||| ||||||||   ||||    
T  34154406 ccagatttgtagcagaagatcctctgcagttaactgcagccggttttttaattcctcggcagttaactgccgatgggacaaaaatgtattttacccgtgt 34154505  T
Q  101 acctcagctttataaaatgtgtcaacaacaa 131  Q
      |||||| |||| |||||||||||||||||    
T  34154506 ttctcagccttatgaaatgtgtcaacaacaa 34154536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 21472507 - 21472618
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||||||||||||||||| ||| |||||| || | |  |||||||||||||||| | ||||  |||||| |||| |||||    
T  21472507 tcctcggcagttaactgcagccgatttttgaattcctcggcagttaactgccgaggcggcaaaaacgtattttactcgtgtttctcagccttatgaaatg 21472606  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  21472607 tgtcaacaacaa 21472618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 49572923 - 49573032
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||||| |||||||||||  || ||||||  | |||| |||||||||||||||| |||||| ||||||| ||||  ||||    
T  49572923 tcctcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatg 49573022  T
Q  120 tgtcaacaac 129  Q
    ||||||||||    
T  49573023 tgtcaacaac 49573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 29700325 - 29700436
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggag-caaaaacgtattttatttgtgtacctcagctttataaaat 118  Q
    ||||| ||||||||||||||||| || ||||||||||||||| ||||||  | | |||| ||||| ||||||||| |||||| ||||||| |||| ||||    
T  29700325 tcctcggcagttaactgcagccggttattgaattcctcagcagttaactgtcga-ggagacaaaagcgtattttacttgtgtgcctcagccttatgaaat 29700423  T
Q  119 gtgtcaacaacaa 131  Q
    |||||||||||||    
T  29700424 gtgtcaacaacaa 29700436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6283445 - 6283498
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattc 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  6283445 ccagatttgaagcagaagatcctcggcagttaactgcagccggtttttgaattc 6283498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 37959743 - 37959854
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||| | || || ||||||||| || |||||| || | || | |||||||||||||| | |||| ||||||| ||||  ||||    
T  37959743 tcctcggcagttaactgcagctggttattaaattcctcaacagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatg 37959842  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  37959843 tgtcaacaacaa 37959854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 39588157 - 39588075
Alignment:
Q  5 atttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgt 87  Q
    |||||||||||||||||||| |||||||||||||| ||| |||  |||||||| ||| |||||| || | || ||||||||||    
T  39588157 atttgtagcagaagatcctcggcagttaactgcagtcgaatttctaattcctcggcagttaactgccgagggggcaaaaacgt 39588075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 51426577 - 51426476
Alignment:
Q  30 ttaactgcagccgatttttgaattcctcagcaattaactacc-aatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaa 128  Q
    ||||||||||||||||||||||||||||  || ||||||  | || ||| ||||||||||||||| |||||| ||| ||| |||| ||| ||||||||||    
T  51426577 ttaactgcagccgatttttgaattcctcgacagttaactgtcgaaagga-caaaaacgtattttacttgtgtgcctaagccttatgaaacgtgtcaacaa 51426479  T
Q  129 caa 131  Q
    |||    
T  51426478 caa 51426476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 51644502 - 51644608
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaact-accaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtca 124  Q
    ||||||||||||||||||||||||||||||||  ||||||| | |  ||  | ||||||  |||||||| || ||| ||||||| | |||||||||||||    
T  51644502 gcagttaactgcagccgatttttgaattcctcgacaattaattgataaaaagggcaaaatggtattttacttatgtgcctcagcctaataaaatgtgtca 51644601  T
Q  125 acaacaa 131  Q
    |||||||    
T  51644602 acaacaa 51644608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 4768722 - 4768617
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||||   ||||||||||||| ||| |||||| || | || ||||||   ||||||| |||||| | ||||| |||| |||||||||||    
T  4768722 gcagttaactgcagccagattttgaattcctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaa 4768623  T
Q  126 caacaa 131  Q
    ||||||    
T  4768622 caacaa 4768617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 49422181 - 49422082
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaac 126  Q
    |||||||||||||||| ||||| |||||||| ||| ||     || | || |||||||||||||||||||||||  |||||| |||| |||||||| |||    
T  49422181 cagttaactgcagccggttttttaattcctcggcagtt-----ccgaaggggcaaaaacgtattttatttgtgtgactcagccttatgaaatgtgtaaac 49422087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 958617 - 958723
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||| ||| ||||||||||| || ||| ||||||  | |  |  ||||||||||||||| || ||| ||||||| ||||||||||    
T  958617 tcctcggcagttaactgcaaccggtttttgaattcatc-gcagttaactgtcgagaggacaaaaacgtattttacttatgtgcctcagccttataaaatg 958715  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  958716 tgtcaaca 958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 4979940 - 4980051
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||||||||||||||||||||| |||||||| || ||  || |||||| || | |||| |||||||||  ||| | |||| ||||| | ||||  ||||    
T  4979940 tcctcagcagttaactgcagccggtttttgaaatcgtcgacagttaactgccgagggaggaaaaacgtaaattactcgtgtgcctcaaccttatgcaatg 4980039  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  4980040 tgtcaacaacaa 4980051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 37865232 - 37865185
Alignment:
Q  6 tttgtagcagaagatcctcagcagttaactgcagccgatttttgaatt 53  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  37865232 tttgtagcagaagatcctcggcagttaactgcaaccgatttttaaatt 37865185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 56304945 - 56304816
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagcc-gatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtg 99  Q
    ||||||||||||||||| |||||| ||| |||||||||||| ||||||| ||||||||  || |||||| || |||| ||||||| |||||||| | |||    
T  56304945 ccagatttgtagcagaaaatcctcggcaattaactgcagccagattttt-aattcctcgacagttaactgccgatgg-gcaaaaatgtattttactcgtg 56304848  T
Q  100 tacctcagctttataaaatgtgtcaacaacaa 131  Q
    |  |||| | |||| |||||||  ||||||||    
T  56304847 tttctcaaccttatcaaatgtgggaacaacaa 56304816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 34151664 - 34151615
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaacta 69  Q
    ||||| |||||||||||||||||||||||||||| ||| ||| |||||||    
T  34151664 tcctcggcagttaactgcagccgatttttgaattactcggcatttaacta 34151615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51429307 - 51429348
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccg 42  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  51429307 ccagatttgtagcagaagatcctcgacagttaactgcagccg 51429348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 24414883 - 24414839
Alignment:
Q  22 ctcagcagttaactgcagccgatttttgaattcctcagcaattaa 66  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||    
T  24414883 ctcagcagttaactgcaaccgatttttgaattcctcggcagttaa 24414839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 34530777 - 34530813
Alignment:
Q  5 atttgtagcagaagatcctcagcagttaactgcagcc 41  Q
    |||||||||||||||||||| ||||||||||||||||    
T  34530777 atttgtagcagaagatcctcggcagttaactgcagcc 34530813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 44051123 - 44051226
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||| ||| | | |||||| ||| |||||  || |||| |||||||||||  ||| | |||| ||||||| ||||  ||||||||||||    
T  44051123 agttaactgcagccggtttcttatttcctcggcagttaaccgccgatggggcaaaaacgtaaattactggtgtgcctcagccttatgcaatgtgtcaaca 44051222  T
Q  128 acaa 131  Q
    ||||    
T  44051223 acaa 44051226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 44561361 - 44561464
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||| ||||| | || ||| ||| ||||| ||| |  | |||||| ||||||||| | ||||  |||||| |||| |||||||||||||    
T  44561361 agttaactgcagccggttttttatttactcggcagttaacaaccgagagggcaaaatcgtattttactcgtgtttctcagccttatgaaatgtgtcaaca 44561460  T
Q  128 acaa 131  Q
    ||||    
T  44561461 acaa 44561464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 18578693 - 18578619
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    |||| |||||||||||| ||||||||||||||  || |||||| |||| |  ||||||| |||||||| ||||||    
T  18578693 gcagataactgcagccgttttttgaattcctcgacagttaactgccaaggaggcaaaaatgtattttacttgtgt 18578619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 56138347 - 56138313
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  56138347 ccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 33383855 - 33383750
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||| || ||||| || |||||  |||||||||||| |    ||||||| |||||||| |||||| ||| | | |||| |||||    
T  33383855 tcctcggcagttaactgcagtcggtttttaaaatcctcgacaattaactaccgagaaggcaaaaatgtattttacttgtgtgcctaaaccttatgaaatg 33383756  T
Q  120 tgtcaa 125  Q
    ||||||    
T  33383755 tgtcaa 33383750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 9473692 - 9473732
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||||||||| ||||||||||  |||||||||    
T  9473692 agttaactgcagccgatttatgaattcctcgacaattaact 9473732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 17342184 - 17342144
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||||||||| |||||||||| ||| ||||||    
T  17342184 agttaactgcagccgatttatgaattcctcggcagttaact 17342144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 24417446 - 24417494
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatg 75  Q
    |||||||||||||||| |||||||||| |||  || |||||||||||||    
T  24417446 cagttaactgcagccggtttttgaatttctcgacagttaactaccaatg 24417494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 34682307 - 34682196
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||||||||||||  || ||||||  ||| ||||||||| ||||||||| ||||| |||||||| |||| |||||    
T  34682307 tcctcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttacttgtgaacctcagccttatgaaatg 34682208  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  34682207 tgtcaacaacaa 34682196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 18538358 - 18538469
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||||||||||||  ||||||||| || | || |||||| ||||||||| |||||| ||||||| | || |||||    
T  18538358 tcctcggcagttaactgcagccggtttttgaattcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatg 18538457  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  18538458 tgtcaacaacaa 18538469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 20192403 - 20192292
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||||| |||||||| |||||| ||||||  | | || |||||| ||||||||| |||||| ||||||| |||| |||||    
T  20192403 tcctcggcagttaactgcagccgattattgaattcttcagcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatg 20192304  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  20192303 tgtcaacaacaa 20192292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 20200171 - 20200282
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||  | || ||||||| ||   || |||||| || |||| ||||||||||||||||||||||| ||||||| ||||  ||||    
T  20200171 tcctcggcagttaactgcagttggttattgaatttcttgacagttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatg 20200270  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  20200271 tgtcaacaacaa 20200282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 3603179 - 3603282
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||  || |||||||| || ||| ||||||  | | ||||||||||||||||||| || ||| ||||||| ||||  ||||||||||||    
T  3603179 agttaactgcagccagttattgaattcttcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaaca 3603278  T
Q  128 acaa 131  Q
    ||||    
T  3603279 acaa 3603282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 18307304 - 18307231
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    ||||| |||||||||| |||||||||||| ||||||||  || |||||| || | |||||||||||||||||||    
T  18307304 tcctcggcagttaactacagccgattttttaattcctcgacagttaactgccgaaggagcaaaaacgtatttta 18307231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 18310050 - 18310155
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||||||||||| || || |||||||||||  || |||||| |  | |  |||||||||||||||| |||||| ||||||| ||||  ||||||||||    
T  18310050 gcagttaactgcagtcggttattgaattcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaa 18310149  T
Q  126 caacaa 131  Q
    ||||||    
T  18310150 caacaa 18310155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42865782 - 42865835
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattc 54  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||    
T  42865782 ccagatttgtagcagaagatcctcggcaattaactgcaaccggtttttgaattc 42865835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 8702221 - 8702307
Alignment:
Q  20 tcctcagcagttaactgcag-ccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctca 106  Q
    |||||||||||||||||||| | ||||||| |||||||| ||| ||||||  | | ||||||||| ||||||||| ||||||||||||    
T  8702221 tcctcagcagttaactgcagtcagattttt-aattcctcggcagttaactgtcgagggagcaaaatcgtattttacttgtgtacctca 8702307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35564356 - 35564322
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35564356 ccagatttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 19228675 - 19228780
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||| ||| ||||| ||||| || ||| |||||| || | || |||   |||||||||| ||||||  |||||| |||| |||||||||||    
T  19228675 gcagttaactgcatccggttttttaattcatcggcagttaactgccgagggggcatttacgtattttacttgtgtgtctcagccttatcaaatgtgtcaa 19228774  T
Q  126 caacaa 131  Q
    ||||||    
T  19228775 caacaa 19228780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 24053224 - 24053119
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||||||||||| || |||||||||| ||| ||| |||||| || |  || |||||||||||||||||| |||  |||  | |||| | |||||||||    
T  24053224 gcagttaactgcagacggtttttgaattactcggcatttaactgccgagagaacaaaaacgtattttatttatgtgtctcgaccttatcatatgtgtcaa 24053125  T
Q  126 caacaa 131  Q
    ||||||    
T  24053124 caacaa 24053119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 542768 - 542802
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  542768 ccagatttgtagcagaagatcctcggcagttaact 542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18307349 - 18307315
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18307349 ccagatttgtagcagaagatcctcggcagttaact 18307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 38968145 - 38968039
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||  ||||  ||||||| | | ||||||||| | ||| ||||||||||||||| || |||   ||||| |||| |||||    
T  38968145 tcctcggcagttaactgcagccggattttttattcctcggtagttaactaccgaaggatcaaaaacgtattttacttatgtttttcagccttatgaaatg 38968046  T
Q  120 tgtcaac 126  Q
    | |||||    
T  38968045 tatcaac 38968039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 3600328 - 3600275
Alignment:
Q  78 gcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    |||||||| ||||||| ||||||  |||| |||||| |||||||||||||||||    
T  3600328 gcaaaaacatattttacttgtgtggctcaactttatgaaatgtgtcaacaacaa 3600275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 6268038 - 6267997
Alignment:
Q  26 gcagttaactgcagccgat-ttttgaattcctcagcaattaa 66  Q
    ||||||||||||||||||| ||||||||||||| ||||||||    
T  6268038 gcagttaactgcagccgattttttgaattcctcggcaattaa 6267997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 24050077 - 24050040
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctc 57  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  24050077 tcctcagcagttaagtgcagccggtttttgaattcctc 24050040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 25497561 - 25497524
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctc 57  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  25497561 tcctcggcagttaactgcagccaatttttgaattcctc 25497524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 42539396 - 42539469
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    ||||| |||||||||||||||||| |||| |||| |||  || ||| ||||| | || ||||||||||||||||    
T  42539396 tcctcggcagttaactgcagccgaatttttaatttctcgacagttagctacctaaggggcaaaaacgtatttta 42539469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 41804056 - 41804167
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||| || |||||||||||||| ||| |||||| || | || |||||| ||||||||| |||||| ||||||| ||||||||||    
T  41804056 tcctcggcagttaactgcagtcggtttttgaattcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctcagccttataaaatg 41804155  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41804156 tgtcaacaacaa 41804167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 35527022 - 35527141
Alignment:
Q  6 tttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctc 105  Q
    |||||||||||||||||||  |||||||||||||||  ||||||| ||| || |||||||||| ||||    |||||||||||||||| |||||| ||||    
T  35527022 tttgtagcagaagatcctctacagttaactgcagcctgtttttgatttcttcggcaattaactgccaagaaggcaaaaacgtattttacttgtgtgcctc 35527121  T
Q  106 agctttataaaatgtgtcaa 125  Q
    ||| |||| |||||||||||    
T  35527122 agccttatgaaatgtgtcaa 35527141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 46973254 - 46973143
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| |||||||||||||| ||| |||||| |||| || |||||| ||||||||| ||||||  |||||| | || |||||    
T  46973254 tcctcggcagttaactgcagccggtttttgaattcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatg 46973155  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  46973154 tgtcaacaacaa 46973143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 11183236 - 11183125
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||  |||| |||||||||||| ||||||  ||| ||||||||||||||||||| | || |  |||||| |||| |||||    
T  11183236 tcctcggcagttaactgcagccggatttttaattcctcagcagttaactgtcaagggagcaaaaacgtattttactcgtatttctcagccttatcaaatg 11183137  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  11183136 tgtcaacaacaa 11183125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14174889 - 14174945
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctc 57  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14174889 ccagatttttagcagaagatcctcggcagttaactgcagccgatttttgaattcctc 14174945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 13173885 - 13173775
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| || |||||||||||||| |||||||||||| ||||| |||||| || | || ||||||  |||||||| |||||| ||||||| |||| |||||    
T  13173885 tcctcggctgttaactgcagccggtttttgaattcc-cagcagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatg 13173787  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  13173786 tgtcaacaacaa 13173775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 18975143 - 18975254
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||| ||  || || ||||||||  || |||||  || | || |||||||||||||||| |||||||||||||||||||| ||||    
T  18975143 tcctctgcagttaactgcaaccagttattaaattcctcgacagttaaccgccgagggggcaaaaacgtattttacttgtgtacctcagctttatacaatg 18975242  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  18975243 tgtcaacaacaa 18975254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 19054101 - 19053998
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||| |||||||||||||| ||| ||||||  | | || |||||||||||||||| | ||||  |||||| |||| |||||||||||||    
T  19054101 agttaactgcagccggtttttgaattcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaaca 19054002  T
Q  128 acaa 131  Q
    ||||    
T  19054001 acaa 19053998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 46141832 - 46141721
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| || ||||||||||| ||| |||||| || |  | |||||| ||||||||| |||||||||||||| ||||  |||     
T  46141832 tcctcggcagttaactgcagccggttattgaattcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaata 46141733  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  46141732 tgtcaacaacaa 46141721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 35521654 - 35521553
Alignment:
Q  30 ttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaac 129  Q
    ||||||||||||| ||||| | |||||| ||| |||||| || |  | |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||    
T  35521654 ttaactgcagccggttttttatttcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaac 35521555  T
Q  130 aa 131  Q
    ||    
T  35521554 aa 35521553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 6437570 - 6437673
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    |||||||||||| ||||| |||| |||||| ||| |||||| || |  | |||||| ||||||||| |||||| ||||||||||||  ||||||||||||    
T  6437570 agttaactgcagtcgattattgacttcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaaca 6437669  T
Q  128 acaa 131  Q
    ||||    
T  6437670 acaa 6437673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 36908627 - 36908521
Alignment:
Q  21 cctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgt 120  Q
    |||| ||||||||||||||||| ||||||||||| ||  || |||||| || | |  ||||||| |||||||| |||||| ||||| | |||||||||||    
T  36908627 cctcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttacttgtgtgcctcatccttataaaatgt 36908528  T
Q  121 gtcaaca 127  Q
    |||||||    
T  36908527 gtcaaca 36908521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 13178155 - 13178228
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    ||||||||||||||||||||| | ||||| |||| ||||||| |||||| || | |||||||||||||||||||    
T  13178155 tcctcagcagttaactgcagctggtttttaaatttctcagcagttaactgccgagggagcaaaaacgtatttta 13178228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27487644 - 27487704
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagca 61  Q
    |||||||||||||||||||||||| |||||||||||||||||   ||| ||||||||||||    
T  27487644 ccagatttgtagcagaagatcctcggcagttaactgcagccggaattttaattcctcagca 27487704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 23276131 - 23276242
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||| |||||  |||| |||||||||||| |||||| || | || |||||||||||||||| | ||||  |||||| |||| |||||    
T  23276131 tcctcggcagttaactgtagccggatttttaattcctcagcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatg 23276230  T
Q  120 tgtcaacaacaa 131  Q
     || ||||||||    
T  23276231 cgtgaacaacaa 23276242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 36076581 - 36076687
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| |||||||||||||| |   ||||||||| | || |  ||||||||||||| ||||||  |||||| |||| |||||    
T  36076581 tcctcggcagttaactgcagccggtttttgaattcctcggtggttaactaccgaagg-ggtaaaacgtattttacttgtgtttctcagccttatgaaatg 36076679  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  36076680 tgtcaaca 36076687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 36072419 - 36072309
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggag--caaaaacgtattttatttgtgtacctcagctttataaaa 117  Q
    ||||| ||||||||||||||||||||||| |||| ||| |||  ||| ||||   ||||  ||||| |||||||||||||||| ||| | | |||| |||    
T  36072419 tcctcggcagttaactgcagccgatttttcaatttctcggcagctaattacc---ggagaacaaaatcgtattttatttgtgtgccttaaccttatgaaa 36072323  T
Q  118 tgtgtcaacaacaa 131  Q
    ||||||||||||||    
T  36072322 tgtgtcaacaacaa 36072309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 13972112 - 13972003
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| || |||||||||||||  ||||| |||||||| ||| | |||| || | || |||||||||||||||| ||||||  |||||| |||| |||||    
T  13972112 tcctcggctgttaactgcagccagttttt-aattcctcggcagt-aactgccgaaggggcaaaaacgtattttacttgtgtttctcagccttatgaaatg 13972015  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  13972014 tgtcaacaacaa 13972003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 49857873 - 49857981
Alignment:
Q  21 cctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgt 120  Q
    |||| ||||||||||||||| ||||||| ||||| || ||| |||||| || | || |||   |||||||||| ||||||  |||| | |||||||||||    
T  49857873 cctcggcagttaactgcagctgatttttaaattcatcggcagttaactgccgagggggcatttacgtattttacttgtgt--ctcaaccttataaaatgt 49857970  T
Q  121 gtcaacaacaa 131  Q
    |||||||||||    
T  49857971 gtcaacaacaa 49857981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 51666662 - 51666768
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    |||||||||||||||||||||||| ||| ||||| ||| ||| |||||| || | || |||||| ||||||||| | ||||  | |||||||||  ||||    
T  51666662 tcctcagcagttaactgcagccga-tttcgaattactcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagctttatgcaatg 51666760  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  51666761 tgtcaaca 51666768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 26633577 - 26633469
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||| ||| ||||||||||| || | | |||||   | | || |||||| ||||||||| |||||| ||||| | |||| |||||    
T  26633577 tcctcggcagttaactgcaaccggtttttgaattcttcggtagttaac---cgagggggcaaaagcgtattttacttgtgtgcctcaaccttatgaaatg 26633481  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  26633480 tgtcaacaacaa 26633469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49426782 - 49426741
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccg 42  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  49426782 ccagatttgtagcagaagatcctcggcagttaattgcagccg 49426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 27485103 - 27485008
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtg 121  Q
    |||||||||||||||||  |||| |||||||  ||| |||||| || | || |||||||||||||||| | ||||  |||||| |||| |||||||    
T  27485103 gcagttaactgcagccggatttttaattcctaggcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatgtg 27485008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 49924906 - 49924795
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||| ||||| ||||||||||  || ||| |||| | || | || |||||||||||  ||| | |||| ||||||| ||||  ||||    
T  49924906 tcctcggcagttaactgtagccggtttttgaatttttcggcagttaattgccgaaggggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatg 49924807  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  49924806 tgtcaacaacaa 49924795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 4516075 - 4516033
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||    
T  4516075 gcagttaactgcagccggtttttgaattcctcggcagttaact 4516033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 27115852 - 27115894
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||    
T  27115852 gcagttaactgcagccggtttttaaattcctcggcaattaact 27115894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29763197 - 29763231
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29763197 ccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42572735 - 42572769
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42572735 ccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 49395698 - 49395664
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  49395698 ccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 19499135 - 19499213
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    ||||| |||||||||||||||||| |||| |||| ||||||| ||||||  | |  | |||||||||||||||| ||||||    
T  19499135 tcctcggcagttaactgcagccgaattttaaatttctcagcagttaactgtcga--gggcaaaaacgtattttacttgtgt 19499213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 44596926 - 44596893
Alignment:
Q  5 atttgtagcagaagatcctcagcagttaactgca 38  Q
    |||||||||||||||| |||||||||||||||||    
T  44596926 atttgtagcagaagatactcagcagttaactgca 44596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 29929476 - 29929365
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||| |||||||| ||||||||||||||| || ||||||  | | ||||||||| | ||||||| |||||| ||||||| ||||||||||    
T  29929476 tcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatg 29929377  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  29929376 tgtcaacaacaa 29929365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 29978630 - 29978519
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||| |||||||| ||||||||||||||| || ||||||  | | ||||||||| | ||||||| |||||| ||||||| ||||||||||    
T  29978630 tcctcggcagttaattgcagccggtttttgaattcctcaacagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatg 29978531  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  29978530 tgtcaacaacaa 29978519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 30256026 - 30256137
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||| ||||||||||| || |||   | |||||||| |||||| |||||||||||| |||||    
T  30256026 tcctcggcagttaactgcagccggttttttaattcctcggcagttaactaccaagggggcatttatgtattttacttgtgtgcctcagctttatgaaatg 30256125  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  30256126 tgtcaacaacaa 30256137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19454329 - 19454459
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| || |  | |||||| ||||||||| | ||||    
T  19454329 ccagatttgtagtagaagatcctcggcagttaactgcaaccgatttttgaattcctcagcagttaactgccgagagggcaaaagcgtattttactcgtgt 19454428  T
Q  101 acctcagctttataaaatgtgtcaacaacaa 131  Q
      |||| | ||||  ||||| ||||||||||    
T  19454429 gtctcaaccttatgcaatgtatcaacaacaa 19454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 43571714 - 43571819
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||||||||||||||| ||||||||||||||||| |||||| || | || |||||||| ||||||| |||||||||| | | ||||  ||||||||||    
T  43571714 gcagttaactgcagccgacttttgaattcctcagcagttaactgccgagggggcaaaaacatattttacttgtgtacctgaaccttatgtaatgtgtcaa 43571813  T
Q  126 caacaa 131  Q
    ||||||    
T  43571814 caacaa 43571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 7247890 - 7247994
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaac 126  Q
    |||||||||||||||| || ||||||||||| ||| |||||| || | || |||||| ||||||||||| |||| ||||||| ||||  |||||||||||    
T  7247890 cagttaactgcagccggttattgaattcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaac 7247989  T
Q  127 aacaa 131  Q
    |||||    
T  7247990 aacaa 7247994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 41579747 - 41579858
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||||| || | || | |||| ||||||||| || ||| ||||||| ||||  || |    
T  41579747 tcctcggcagttaactgcagccggttattgaattcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttatgcaacg 41579846  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41579847 tgtcaacaacaa 41579858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 45101872 - 45101982
Alignment:
Q  21 cctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgt 120  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||| || | ||   |||||||||||||| || ||| ||||| | |||| ||||||    
T  45101872 cctcggcagttaactgcagccggtttttgaattcctcaacaattaactgccgaggggataaaaacgtattttacttatgtgcctcaaccttatgaaatgt 45101971  T
Q  121 gtcaacaacaa 131  Q
    ||| |||||||    
T  45101972 gtcgacaacaa 45101982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 46344987 - 46344880
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||||||||||||||||||  || |||||| || | || |||||||  ||||||| |||||| ||||| | ||||  |||     
T  46344987 tcctcggcagttaactgcagccgatttttgaattcctcgacagttaactgccgagggggcaaaaaaatattttacttgtgtgcctcaaccttatccaatt 46344888  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  46344887 tgtcaaca 46344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 28611123 - 28611234
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| |||||||||| ||| ||| |||||| || | || ||||||   ||||||| ||||||  |||||| |||| |||||    
T  28611123 tcctcggcagttaactgcagccggtttttgaatttctcggcagttaactgccgagggggcaaaattatattttacttgtgtgtctcagccttatgaaatg 28611222  T
Q  120 tgtcaacaacaa 131  Q
    ||| || |||||    
T  28611223 tgtaaagaacaa 28611234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 66942 - 66841
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||| |||| |||| |||| ||| |||||| || | || |||||| ||||||||| | ||||  |||||| |||| |||||||||||||    
T  66942 agttaactgcagccggtttt-gaatacctcggcagttaactgccgagggggcaaaagcgtattttactcgtgtgtctcagccttatcaaatgtgtcaaca 66844  T
Q  128 aca 130  Q
    |||    
T  66843 aca 66841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 2745235 - 2745308
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgt 100  Q
    ||||||||||||||||| |||  |||||||||||| ||||||||| | || | |||| ||||||||||| ||||    
T  2745235 cagttaactgcagccgaatttcaaattcctcagcagttaactaccgagggggtaaaatcgtattttattggtgt 2745308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 41577067 - 41577014
Alignment:
Q  78 gcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    ||||||||||||||||||||| |  |||||| |||| |||||||||||||||||    
T  41577067 gcaaaaacgtattttatttgtatttctcagccttatgaaatgtgtcaacaacaa 41577014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 50216883 - 50216944
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgt 87  Q
    |||||||||||||||||  |||| |||||||| ||| |||||| ||||||| ||||||||||    
T  50216883 gcagttaactgcagccggatttttaattcctcggcagttaactgccaatggggcaaaaacgt 50216944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 55207692 - 55207793
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||| ||| ||||||||||| || ||| |||||| || |||| ||||||  |||||||| | ||||  ||||||  ||| |||||||||||    
T  55207692 gcagttaactgcaaccggtttttgaattcttcggcagttaactgccgatggggcaaaagagtattttactcgtgtttctcagccatatgaaatgtgtcaa 55207791  T
Q  126 ca 127  Q
    ||    
T  55207792 ca 55207793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 11380492 - 11380380
Alignment:
Q  19 atcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaat 118  Q
    |||||| ||||||||||||| ||   |||| |||||||| ||| |||||| || | || |||||||||||||||| | ||||  |||||| | |  ||||    
T  11380492 atcctcggcagttaactgcaaccatatttttaattcctcggcagttaactgccgaaggggcaaaaacgtattttactcgtgtttctcagcctaaccaaat 11380393  T
Q  119 gtgtcaacaacaa 131  Q
    |||||||||||||    
T  11380392 gtgtcaacaacaa 11380380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 29918364 - 29918475
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| |||| |||||  || ||| |||| | || | ||  ||||| ||||||||| || ||| ||||||| |||| ||||     
T  29918364 tcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaata 29918463  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  29918464 tgtcaacaacaa 29918475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 29967517 - 29967628
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| |||| |||||  || ||| |||| | || | ||  ||||| ||||||||| || ||| ||||||| |||| ||||     
T  29967517 tcctcggcagttaactgcagccggttttcgaattattcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaata 29967616  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  29967617 tgtcaacaacaa 29967628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 52570597 - 52570699
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    |||||||||||| || ||||||||||| || ||| |||||| || | || | |||||||||||||| | |||| ||||||| ||||  |||||||||||     
T  52570597 agttaactgcagtcggtttttgaattcttcggcagttaactgccgaggg-gaaaaaacgtattttaatcgtgtgcctcagccttatgcaatgtgtcaacg 52570695  T
Q  128 acaa 131  Q
    ||||    
T  52570696 acaa 52570699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2271291 - 2271325
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2271291 ccagatttgtagcagaagatcctcggcagttaact 2271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34694412 - 34694446
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  34694412 ccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 36134418 - 36134384
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  36134418 ccagatttgtagcagaagatcctcggcagttaact 36134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 43568942 - 43568865
Alignment:
Q  53 tcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    ||||||||| ||||||||  | || |||||| ||||||||| | ||||  |||||| ||||||||||||||||||||||    
T  43568942 tcctcagcagttaactactcaagg-gcaaaagcgtattttactcgtgtttctcagccttataaaatgtgtcaacaacaa 43568865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45101826 - 45101860
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  45101826 ccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 55207641 - 55207675
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  55207641 ccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 41137768 - 41137695
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    ||||| |||||||||||||||||  |||  |||||||| ||| |||||| |  ||||||||||||| |||||||    
T  41137768 tcctcggcagttaactgcagccggatttcaaattcctcggcagttaactgctgatggagcaaaaacatatttta 41137695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 41803048 - 41802975
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    ||||| ||||||||||||||||| ||||| ||||| || ||| |||||| || |  | ||||||||||||||||    
T  41803048 tcctcggcagttaactgcagccggtttttaaattcttcggcagttaactgccgagtgggcaaaaacgtatttta 41802975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 42804499 - 42804398
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||| |   ||||| |||||||| ||| ||||||| | | || || |||  |||||||| |||||| ||||||| |||| |||||||||||    
T  42804499 gcagttaactgcaactagttttttaattcctcggcagttaactatcgagggggctaaagtgtattttacttgtgtgcctcagccttatgaaatgtgtcaa 42804400  T
Q  126 ca 127  Q
    ||    
T  42804399 ca 42804398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 42807681 - 42807734
Alignment:
Q  78 gcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    ||||||| ||||||||||||||| | ||||| |||| |||||||| ||||||||    
T  42807681 gcaaaaatgtattttatttgtgtgcatcagccttatgaaatgtgttaacaacaa 42807734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 43568960 - 43568927
Alignment:
Q  2 cagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||| |||||||||||||||||||||||    
T  43568960 cagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 51402377 - 51402410
Alignment:
Q  2 cagatttgtagcagaagatcctcagcagttaact 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  51402377 cagatttgtagcagaagatcctcggcagttaact 51402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 55267481 - 55267380
Alignment:
Q  30 ttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaac 129  Q
    ||||||||||||||||||||||||| || ||| ||||||  | | || |||||||||||  ||| | ||||  |||||| ||||  || |||||||||||    
T  55267481 ttaactgcagccgatttttgaattcttcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgtctcagccttatgcaacgtgtcaacaac 55267382  T
Q  130 aa 131  Q
    ||    
T  55267381 aa 55267380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 20366237 - 20366189
Alignment:
Q  25 agcagttaactgcagccgatttttgaattcctcagcaattaactaccaa 73  Q
    |||||||||||||||| | |||||||||||||| ||| |||||| ||||    
T  20366237 agcagttaactgcagctggtttttgaattcctcggcagttaactgccaa 20366189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 50604451 - 50604491
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||| |||||| || |||||||||||||||||    
T  50604451 agttaactgcagctgattttggacttcctcagcaattaact 50604491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 51402428 - 51402528
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaac 126  Q
    ||||||||| ||  |||||||||||||  || |||||||||| |  | | ||||||||||||||||| | ||||  ||||||  ||| ||||||||||||    
T  51402428 cagttaactacaatcgatttttgaattattctgcaattaactgctgaggaagcaaaaacgtattttactcgtgtttctcagccatatgaaatgtgtcaac 51402527  T
Q  127 a 127  Q
    |    
T  51402528 a 51402528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 13479774 - 13479665
Alignment:
Q  22 ctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtg 121  Q
    ||||||||||||||||||| | |||||||||||| |  || ||||||||| | || |||||| ||||||||| |||||| ||||||| |||| |||||||    
T  13479774 ctcagcagttaactgcagctggtttttgaattccccgacagttaactaccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgaaatgtg 13479675  T
Q  122 tcaacaacaa 131  Q
    ||||||||||    
T  13479674 tcaacaacaa 13479665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 35021286 - 35021394
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||||| || | || ||||||  |||||||| | ||||  ||||||  |||||||||    
T  35021286 tcctcggcagttaactgcagccggtttttgaattcttccgcatttaactgccgagggggcaaaagtgtattttactcgtgtttctcagccatataaaatg 35021385  T
Q  120 tgtcaacaa 128  Q
    |||||||||    
T  35021386 tgtcaacaa 35021394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 13401536 - 13401429
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    |||| |||||||||||||||||||||||| |||||||| ||| |||||| || | || |||||| | ||||| | | ||||  |||| | ||||||||||    
T  13401536 tccttagcagttaactgcagccgattttttaattcctcggcagttaactgccgagggggcaaaagcatatttaactcgtgttactcaaccttataaaatg 13401437  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  13401436 tgtcaaca 13401429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 23986010 - 23986097
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttat 113  Q
    ||||||||||||| ||| |||||||||| ||| ||| |||||| |||| || |||||||||||||||| ||||||  |||||| ||||    
T  23986010 gcagttaactgcaaccggtttttgaatttctcggcagttaactgccaagggggcaaaaacgtattttacttgtgtgtctcagccttat 23986097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29061365 - 29061298
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    |||||||||||||||||||||||| | |||||||||||||||| |||  |||||||| ||| ||||||    
T  29061365 ccagatttgtagcagaagatcctcggaagttaactgcagccgaatttctaattcctcggcagttaact 29061298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 18001257 - 18001153
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||||| ||||| ||||||||| || |||||| || || | |||   || ||||||| |||||||||||| | |||| |||||||||||    
T  18001257 gcagttaactgcagccggttttt-aattcctcaacagttaactgccgatagggcatttacatattttacttgtgtacctcaaccttatgaaatgtgtcaa 18001159  T
Q  126 caacaa 131  Q
    ||||||    
T  18001158 caacaa 18001153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 32026096 - 32026044
Alignment:
Q  79 caaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    ||||||||||||||| |||||| ||||||| |||| |||||||||||||||||    
T  32026096 caaaaacgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaa 32026044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 18606094 - 18605984
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| | |   |||||||  ||| ||||||||| | || |||||||||||||||| | |||| ||||||| | ||| ||||    
T  18606094 tcctcggcagttaactgcagccggtgtca-aattcctaggcagttaactaccgagggggcaaaaacgtattttactcgtgtgcctcagcctcatacaatg 18605996  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  18605995 tgtcaacaacaa 18605984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 23958940 - 23958829
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||| ||||||||||||| |||| ||||| ||| ||| |||||| || | ||  ||||||||||||||| ||| ||  |||||| |||| | |||    
T  23958940 tcctcggcatttaactgcagccggttttggaatttctcggcagttaactgccgaggggacaaaaacgtattttagttgggtgtctcagccttatcatatg 23958841  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  23958840 tgtcaacaacaa 23958829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 29286279 - 29286168
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||| ||| ||| | | |||||| ||| ||||||||| | || |||||||||||  ||| |||||| ||||| | ||||  ||||    
T  29286279 tcctcggcagttaactgcaaccggtttcttatttcctcggcagttaactaccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatg 29286180  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  29286179 tgtcaacaacaa 29286168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 12783991 - 12784073
Alignment:
Q  31 taactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttat 113  Q
    |||||||||||| || |||||||| || ||| |||||| || |||| |||||| ||||||||| |||||| ||||||| ||||    
T  12783991 taactgcagccggttattgaattcatcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctcagccttat 12784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 13404661 - 13404771
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||| | || |||||||||||  || ||||||||| | || |||||  ||||||||| |||||| |||| || ||||  ||||||| ||    
T  13404661 gcagttaactgcagcaggttattgaattcctcgacagttaactaccgagggggcaaacgcgtattttacttgtgtgcctcggccttatgcaatgtgttaa 13404760  T
Q  126 caacaaatctt 136  Q
    |||||| ||||    
T  13404761 caacaattctt 13404771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32034370 - 32034411
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccg 42  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  32034370 ccagatttgtagcagaagatcatcggcagttaactgcagccg 32034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12783935 - 12783969
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12783935 ccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 7537240 - 7537180
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgta 88  Q
    ||||||||||||||| ||||| ||||||||  ||||||||| || | || |||||||||||    
T  7537240 agttaactgcagccggttttttaattcctcgacaattaactgccgagggggcaaaaacgta 7537180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 21188404 - 21188471
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||    
T  21188404 ccagatttgtagcagaagatcctcggcagttaactgcagccggtttttgaattcctcggcagttaact 21188471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 30355262 - 30355373
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| || | || |||||| ||||||||| | ||||  |||||   ||| |||||    
T  30355262 tcctcggcagttaactgcagccgatttttgaattcttcagcaattaactgccgagggggcaaaagcgtattttactcgtgtttctcagtcatatgaaatg 30355361  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  30355362 tgtcaacaacaa 30355373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 9494829 - 9494940
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||| |||||| || | || ||| | || ||||||| |||||| ||||||| |||| |||||    
T  9494829 tcctcggcagttaactgcagccggttttttaattcctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaaatg 9494928  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  9494929 tgtcaacaacaa 9494940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 36392175 - 36392064
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||| ||| ||||||||||||||||||| || ||||||  | | || |||||||||||||||| |||||| ||| ||| ||||  ||||    
T  36392175 tcctcggcagttaaccgcaaccgatttttgaattcctcaacagttaactgtcgagggggcaaaaacgtattttacttgtgtgcctaagccttatgtaatg 36392076  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  36392075 tgtcaacaacaa 36392064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 131
Target Start/End: Original strand, 46863373 - 46863478
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||||| ||||| |||| ||| ||| |||||| || |||| |||||||||||||||| ||||||  |||||| ||||  |||| |||||    
T  46863373 gcagttaactgcagccggtttttcaatttctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaa 46863472  T
Q  126 caacaa 131  Q
    ||||||    
T  46863473 caacaa 46863478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 48314715 - 48314613
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    ||||||||||||||| || ||||||||||| ||| |||||| || | || ||||||| |||||||| |||||||||||| | ||||  ||||||||||||    
T  48314715 agttaactgcagccggttattgaattcctcggcagttaactgccgaggg-gcaaaaatgtattttacttgtgtacctcaaccttatgcaatgtgtcaaca 48314617  T
Q  128 acaa 131  Q
    ||||    
T  48314616 acaa 48314613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 10705292 - 10705187
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||||||||||| |||| ||| ||| |||||| |||| || | ||||| |||||||| |||||| ||| ||| |||| |||| ||||||    
T  10705292 gcagttaactgcagccgattttttaatttctcggcagttaactgccaaggggggaaaaatgtattttacttgtgtgccttagccttatgaaatatgtcaa 10705193  T
Q  126 caacaa 131  Q
     |||||    
T  10705192 taacaa 10705187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 47060976 - 47060869
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||| ||||||||||| |||||||||  || |||||| || | || |||||||||||||||| |||| | ||||||| |||| ||||     
T  47060976 tcctcggcagttaactacagccgatttt-gaattcctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctcagccttatgaaata 47060878  T
Q  120 tgtcaacaa 128  Q
    |||||||||    
T  47060877 tgtcaacaa 47060869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 34622542 - 34622438
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaac 126  Q
    ||||||||||||| || ||| | |||||||| ||| ||||||  ||| || |||||||||||  ||| |||||| ||||||| ||||  |||||||||||    
T  34622542 cagttaactgcagtcggtttcttaattcctctgcagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaac 34622443  T
Q  127 aacaa 131  Q
    |||||    
T  34622442 aacaa 34622438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 41049212 - 41049322
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||||| |||||||| ||  || ||||||||| |  || ||||| ||||||||| || ||| | ||||| ||||  ||||    
T  41049212 tcctcggcagttaactgcagccgattattgaattcttcgacagttaactaccga-agaacaaaagcgtattttacttatgtgcatcagccttatgcaatg 41049310  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41049311 tgtcaacaacaa 41049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 48269671 - 48269620
Alignment:
Q  80 aaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    |||||| ||||||| |||||| ||||||| ||||||||||||||||||||||    
T  48269671 aaaaacatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaa 48269620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 48316296 - 48316398
Alignment:
Q  33 actgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaaa 132  Q
    |||||||||| || ||||| || || ||| ||||||  ||| || |||||||| ||||||| ||||||  |||||| |||| ||||||| ||||||||||    
T  48316296 actgcagccggttattgaagtcttcggcagttaactgtcaagggggcaaaaacttattttacttgtgtgtctcagccttatgaaatgtgccaacaacaaa 48316395  T
Q  133 tct 135  Q
    |||    
T  48316396 tct 48316398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 42682044 - 42681933
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggag-caaaaacgtattttatttgtgtacctcagctttataaaat 118  Q
    ||||| ||||||||||||||| | |||||||||| |||| |  ||||||||| | |||| |||||| | |||||| || ||| ||||||| |||||||||    
T  42682044 tcctcggcagttaactgcagctggtttttgaatttctcaaccgttaactaccga-ggagacaaaaatgcattttacttatgtgcctcagccttataaaat 42681946  T
Q  119 gtgtcaacaacaa 131  Q
     |||||| |||||    
T  42681945 atgtcaagaacaa 42681933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 46860553 - 46860457
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtca 124  Q
    |||||||||||| || ||||| ||||||||  || |||||| || | || |||||| ||||||||| |||||| ||||||| ||||  |||||||||    
T  46860553 agttaactgcagtcggtttttcaattcctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgtaatgtgtca 46860457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 27453617 - 27453728
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||||||||||  |||| |||||||| ||| |||||| || | || |||||  ||||||||| || |||  || ||| |||| |||||    
T  27453617 tcctcggcagttaactgcagccggatttttaattcctcggcagttaactgccgagggggcaaagtcgtattttacttatgtttctaagccttatcaaatg 27453716  T
Q  120 tgtcaacaacaa 131  Q
    ||| ||||||||    
T  27453717 tgtgaacaacaa 27453728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 34139966 - 34139879
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgta 88  Q
    ||||||||||||  |||||||||| |||||||||||||||||  |||  ||||| || ||| |||| |||| | || |||||||||||    
T  34139966 ccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaattcttcggcagttaattaccgaaggggcaaaaacgta 34139879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 41047827 - 41047717
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||||| || |||||| || ||||| || ||| ||||||||| | | |||||||| ||||||||||| ||| || |||  ||||  ||||    
T  41047827 tcctcggcagttaactacacccgattattaaattcttctgcagttaactaccga-gaagcaaaaatgtattttatttatgtgccgcagtcttatgcaatg 41047729  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  41047728 tgtcaacaacaa 41047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30355217 - 30355251
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30355217 ccagatttgtagcagaagatcctcggcagttaact 30355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41047872 - 41047838
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41047872 ccagatttgtagcagaagatcctcggcagttaact 41047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 41623884 - 41623945
Alignment:
Q  66 actaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    |||||||| || |||||||||||||||| |||||| ||||| | ||||  ||||||||||||    
T  41623884 actaccaagggggcaaaaacgtattttacttgtgtgcctcaaccttatgtaatgtgtcaaca 41623945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 34623403 - 34623471
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgta 88  Q
    ||||| ||||||||||||||||||| | | |||||||| ||| |||||| || |||  |||||||||||    
T  34623403 tcctcggcagttaactgcagccgatctcttaattcctcggcagttaactgccgatgaggcaaaaacgta 34623471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 39460603 - 39460555
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    |||||||||||||||||||||||  |||| |||||||| ||||| ||||    
T  39460603 tcctcagcagttaactgcagccggatttttaattcctcggcaatcaact 39460555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 11735 - 11840
Alignment:
Q  22 ctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtg 121  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||||| || | || ||||||  |||||||| ||||||| ||||   ||||||||||||    
T  11735 ctcagcagttaactgcagccggtttttgaattcttcagcagttaactgccgaaggggcaaaagtgtattttacttgtgtatctcaatcttataaaatgtg 11834  T
Q  122 tcaaca 127  Q
    ||||||    
T  11835 tcaaca 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 2917733 - 2917622
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||| ||||| ||||| |||| ||| ||| |||||| || | || |||||||||||||||| || ||| ||||||| |||| |||||    
T  2917733 tcctcggcagttaactgtagccggtttttcaatttctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaaatg 2917634  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  2917633 tgtcaacaacaa 2917622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 19186797 - 19186686
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    |||| |||||||||||||||||| |||||||||| ||| ||| || ||| || |||| | |||||||||||||| ||||||  |||||| |||| | |||    
T  19186797 tccttagcagttaactgcagccgctttttgaattgctcggcagtttactgccgatggggtaaaaacgtattttacttgtgtgtctcagccttatgatatg 19186698  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  19186697 tgtcaacaacaa 19186686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 35493364 - 35493475
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||||||| | |||||||||||||| ||| ||||||||| | || |||||| ||||||||| | ||||  |||| | ||||  ||||    
T  35493364 tcctcggcagttaactgcagctggtttttgaattcctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatg 35493463  T
Q  120 tgtcaacaacaa 131  Q
    ||||||||||||    
T  35493464 tgtcaacaacaa 35493475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 45475490 - 45475383
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||||||||| ||||| |||||||||| ||| ||| |||||| || | || |||||| ||||||||| ||||||  |||||| |||| |||||    
T  45475490 tcctcggcagttaactgtagccggtttttgaatttctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtgtctcagccttatgaaatg 45475391  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  45475390 tgtcaaca 45475383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 34921782 - 34921886
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||||||||||||||||||||| |||||||||| ||| ||| |||||||||   || |||||||||||||||| | ||||  ||| || |||| |||||    
T  34921782 tcctcagcagttaactgcagccggtttttgaatttctcggcagttaactacc-ggggggcaaaaacgtattttactcgtgtttctctgccttatgaaatg 34921880  T
Q  120 tgtcaa 125  Q
    ||||||    
T  34921881 tgtcaa 34921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 41181487 - 41181380
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||| || ||||| || ||||||||||| ||| |||||| || | || |||||||||||||||| | |||| ||||||| ||||  ||||    
T  41181487 tcctcggcagttaaatgtagccggttattgaattcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatg 41181388  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  41181387 tgtcaaca 41181380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 8268780 - 8268883
Alignment:
Q  28 agttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaaca 127  Q
    |||||| ||||||||||||||| |||||| | || |||||| || | ||  ||||| ||||||||| |  ||||| ||||  ||||||||||||||||||    
T  8268780 agttaattgcagccgatttttgcattccttaacagttaactgccgaggggacaaaatcgtattttactaatgtacgtcagtcttataaaatgtgtcaaca 8268879  T
Q  128 acaa 131  Q
    ||||    
T  8268880 acaa 8268883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 43493286 - 43493373
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttat 113  Q
    |||||||  |||||||||||||| ||||||| |||| |||||| || | || |||||||||||||||| ||||||  |||||| ||||    
T  43493286 gcagttatttgcagccgattttttaattccttagcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttat 43493373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 45137462 - 45137529
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtatttta 93  Q
    |||||||||||||||||| |||| |||||||| |||||||||| |||| |  |||||| |||||||||    
T  45137462 gcagttaactgcagccgaatttttaattcctcggcaattaactgccaaggaggcaaaatcgtatttta 45137529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 36255061 - 36255019
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  36255061 gcagttaactgcagccgatttttaaattcctcggcaattaact 36255019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 43950265 - 43950374
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| |||||||| ||||| || |||| ||||||| ||||| |||||| || | || ||||||| |||||||| | ||||  |||||| |||| |||||    
T  43950265 tcctcggcagttaattgcagtcggtttt-gaattccacagcagttaactgccgagggggcaaaaatgtattttactcgtgtttctcagccttatcaaatg 43950363  T
Q  120 tgtcaacaaca 130  Q
    |||||||||||    
T  43950364 tgtcaacaaca 43950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 23409524 - 23409572
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    ||||| ||||||||||||||||  |||||||||||||| ||||||||||    
T  23409524 tcctcggcagttaactgcagccagtttttgaattcctcggcaattaact 23409572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29093806 - 29093842
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29093806 ccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 9660078 - 9660185
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatg 119  Q
    ||||| ||||| ||||||||||| || ||| ||||||| ||| |||||| || |  | ||||||| |||  ||| | |||||||||||||||||  ||||    
T  9660078 tcctcggcagtcaactgcagccggttattgtattcctcggcagttaactgccgagagggcaaaaaagtaaattactcgtgtacctcagctttatgcaatg 9660177  T
Q  120 tgtcaaca 127  Q
    ||||||||    
T  9660178 tgtcaaca 9660185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2920494 - 2920528
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2920494 ccagatttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24512262 - 24512228
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24512262 ccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 28472171 - 28472141
Alignment:
Q  12 gcagaagatcctcagcagttaactgcagccg 42  Q
    |||||||||||||||||||||||||||||||    
T  28472171 gcagaagatcctcagcagttaactgcagccg 28472141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41500212 - 41500246
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41500212 ccagatttgtagcagaagatcctcggcagttaact 41500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 12905593 - 12905492
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    ||||||||||||||||||||||| |||| ||| ||| |||||| || | ||   |||| ||||||||| |  |||  |||||| |||| |||||||||||    
T  12905593 gcagttaactgcagccgatttttcaatttctcggcagttaactgccgaggggaaaaaagcgtattttactcttgtttctcagccttatgaaatgtgtcaa 12905494  T
Q  126 ca 127  Q
    ||    
T  12905493 ca 12905492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40679575 - 40679608
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40679575 ccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 35490727 - 35490683
Alignment:
Q  23 tcagcagttaactgcagccgatttttgaattcctcagcaattaac 67  Q
    |||||||||||||||||||| ||||||||||| || ||| |||||    
T  35490727 tcagcagttaactgcagccggtttttgaattcttcggcagttaac 35490683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 3935 - 3898
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctc 57  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  3935 tcctcggcagttaactgcagccgatttttgaattcctc 3898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 7333 - 7433
Alignment:
Q  26 gcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaa 125  Q
    |||||| | |||||||| |||||||||||||||||||||||||  ||| |  |||||||| ||||||| |  ||| ||||| | |||| |||| ||||||    
T  7333 gcagttgattgcagccggtttttgaattcctcagcaattaactgtcaaggaggcaaaaacatattttactcatgtgcctcaaccttatgaaatttgtcaa 7432  T
Q  126 c 126  Q
    |    
T  7433 c 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 27433 - 27382
Alignment:
Q  80 aaaaacgtattttatttgtgtacctcagctttataaaatgtgtcaacaacaa 131  Q
    |||||||||||||| |||||| ||| | |||||| |||||||||||||||||    
T  27433 aaaaacgtattttacttgtgtgccttaactttatgaaatgtgtcaacaacaa 27382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 891 - 804
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgta 88  Q
    ||||||||||||  |||||||||| |||||||||||||||||  |||  ||||| || ||| |||| |||| | || |||||||||||    
T  891 ccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaattcttcggcagttaattaccgaaggggcaaaaacgta 804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12366 - 12400
Alignment:
Q  1 ccagatttgtagcagaagatcctcagcagttaact 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12366 ccagatttgtagcagaagatcctcggcagttaact 12400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 20142 - 20183
Alignment:
Q  27 cagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  20142 cagttaactgtagccgatttttgaattcctcggcagttaact 20183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 15753 - 15685
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaactaccaatggagcaaaaacgta 88  Q
    ||||| ||||||||||||| ||| ||||||||||||||  || ||||||  |||||  |||||||||||    
T  15753 tcctcggcagttaactgcaaccggtttttgaattcctcgacagttaactgtcaatgaggcaaaaacgta 15685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 1680 - 1717
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctc 57  Q
    |||||||||||||||||||| || ||||||||||||||    
T  1680 tcctcagcagttaactgcagtcggtttttgaattcctc 1717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 22453 - 22405
Alignment:
Q  20 tcctcagcagttaactgcagccgatttttgaattcctcagcaattaact 68  Q
    |||||||||||||||||||||||| |||  |||||||| ||| ||||||    
T  22453 tcctcagcagttaactgcagccgaatttcaaattcctcggcagttaact 22405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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