View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19618_high_5 (Length: 600)
Name: NF19618_high_5
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 6 - 588
Target Start/End: Original strand, 37062831 - 37063410
Alignment:
| Q |
6 |
aggatcacagatacaccagaaacccactgcaaatccaacacccaacccaaagtagagtgattgtgtaaaagaattctcatcattatcaatatcattgtgt |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37062831 |
aggaccacaaatacaccagaaacccactgcaaatccaacacccaacccaaagtagagtgattgtgtaaaagaattctcatcattatcaatatcattgtgt |
37062930 |
T |
|
| Q |
106 |
cctcctccatgtaggtatgacccatgatcacatattggtagaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaactttgaagtt |
205 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37062931 |
cct---ccatgtaggtatgacccatgatcacatattggtagaggagctccacaaagtccaggattcccaacatagtaggaagcatcaaaactttgaagtt |
37063027 |
T |
|
| Q |
206 |
gagtcccaactgggatttgcccaacaaggtaattgtttgacagattcaagaaacacaagaaggacaaagttgacgtggtaacaggaattcctccaacaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37063028 |
gagtcccaactgggatttgcccaacaaggtaattgtttgacagattcaagaaactcaagaaggacaaagttgatgtggtaacaggaattcctccaacaag |
37063127 |
T |
|
| Q |
306 |
tttattgtcggatagatcaagagattccaagtttttcatgtctccgatgtctcttggtatctttcctgtgaaatgatttcgagacaagttcaatgacttg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37063128 |
tttattgtcggatagatcaagagattccaagtttttcatgtctccgatgtctcttggtatctttcctgtgaaatgatttcgagacaagttcaatgacttg |
37063227 |
T |
|
| Q |
406 |
agttgaactagattgaaaactcgtgaggggatttcacctgataagttgttagctgaaaggtcaagagttctcaacagtccatagtcataatactctaggt |
505 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37063228 |
agttgaactagattgaaaacttgtgaggggatttcacctgataagttgttagctgaaaggtcaagagttctcaacagtccatagtcataatactctaagt |
37063327 |
T |
|
| Q |
506 |
ctcgcccttttgtatacaatttgaactcaaatggataatgactcgttttctttgctccacccatgccagtgatgttacttatg |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37063328 |
ctcgcccttttgtatacaatttgaactcaaatggataatgactcgttttctttgctccacccatgccagtgatgttacttatg |
37063410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 17943261 - 17943183
Alignment:
| Q |
145 |
agaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaactttgaagttgagtcccaactgggattt |
223 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || | || |||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
17943261 |
agaggagctccacatagtttaggattcccaatgtaactcgatgcattaaaactttgaagttgagttccaattgggattt |
17943183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 13665641 - 13665705
Alignment:
| Q |
145 |
agaggagctccacaaagtccaggattcccaacatagcaggaagcatcaaaactttgaagttgagt |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| | || |||| |||||||||||||||||| |
|
|
| T |
13665641 |
agaggagctccacaaagtttaggattcccaatataacttgatgcattaaaactttgaagttgagt |
13665705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University