View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_high_50 (Length: 208)

Name: NF19618_high_50
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_high_50
NF19618_high_50
[»] chr8 (5 HSPs)
chr8 (14-187)||(28810259-28810432)
chr8 (67-109)||(6501494-6501536)
chr8 (76-110)||(14740738-14740772)
chr8 (75-116)||(29198490-29198531)
chr8 (77-109)||(38902493-38902525)
[»] chr3 (4 HSPs)
chr3 (67-123)||(21110467-21110523)
chr3 (67-110)||(32166200-32166243)
chr3 (68-111)||(1502574-1502617)
chr3 (71-119)||(20691322-20691370)
[»] chr1 (4 HSPs)
chr1 (66-132)||(30847715-30847781)
chr1 (69-111)||(31667426-31667468)
chr1 (67-110)||(29230064-29230107)
chr1 (76-112)||(11571593-11571629)
[»] chr4 (7 HSPs)
chr4 (70-111)||(8457927-8457968)
chr4 (68-111)||(5654607-5654650)
chr4 (76-119)||(18513249-18513292)
chr4 (81-119)||(40224506-40224544)
chr4 (74-111)||(2976700-2976737)
chr4 (67-112)||(5109971-5110016)
chr4 (62-119)||(14465302-14465359)
[»] chr7 (6 HSPs)
chr7 (67-119)||(38134414-38134466)
chr7 (79-120)||(10893354-10893395)
chr7 (67-99)||(27112108-27112140)
chr7 (76-120)||(36314634-36314678)
chr7 (79-111)||(37775993-37776025)
chr7 (76-120)||(44172897-44172941)
[»] chr6 (3 HSPs)
chr6 (77-117)||(8148129-8148169)
chr6 (64-111)||(30781310-30781357)
chr6 (78-119)||(9024184-9024225)
[»] chr2 (2 HSPs)
chr2 (76-119)||(18570980-18571023)
chr2 (71-111)||(32843716-32843756)
[»] chr5 (1 HSPs)
chr5 (76-120)||(28296336-28296380)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 28810432 - 28810259
Alignment:
Q  14 taattctcaaaattgtgaagcactgacatagacaccgaacactagagtggcactgacactggtaataatgtgagaaaatgacataattaaatgtaatcgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28810432 taattctcaaaattgtgaagcactgacatagacaccgaacacaagagtggcactgacactcgtaataatgtgagaaaatgacataattaaatgtaatcgt 28810333  T
Q  114 atgtgttagttttgcacactaacatatgtctgacacgtgatcgactaaaagtgtatgtgctatagagcgtgtta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28810332 atgtgttagttttgcacactaacatatgtctgacacgtgatcgactaaaagtgtatgtgctatagagcgtgtta 28810259  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 6501494 - 6501536
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaa 109  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  6501494 tgacactggtaataatttgagagaatgaaataattaaatgtaa 6501536  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 14740738 - 14740772
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaat 110  Q
    |||||||||||||||||||||||||| ||||||||    
T  14740738 taataatgtgagaaaatgacataattcaatgtaat 14740772  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 29198531 - 29198490
Alignment:
Q  75 gtaataatgtgagaaaatgacataattaaatgtaatcgtatg 116  Q
    |||||||| |||||||||||||||||| ||||||||| ||||    
T  29198531 gtaataatttgagaaaatgacataattcaatgtaatcatatg 29198490  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 38902493 - 38902525
Alignment:
Q  77 aataatgtgagaaaatgacataattaaatgtaa 109  Q
    |||||| ||||||||||||||||||||||||||    
T  38902493 aataatatgagaaaatgacataattaaatgtaa 38902525  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 21110523 - 21110467
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaatcgtatgtgttagt 123  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||  |||||||||||    
T  21110523 tgacactcgtaataatttgagaaaatgacataattgaatgtaatattatgtgttagt 21110467  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 32166243 - 32166200
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaat 110  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  32166243 tgacactggtaataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 1502574 - 1502617
Alignment:
Q  68 gacactggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    ||||||||||||||| | |||||||||||||||| |||||||||    
T  1502574 gacactggtaataatctaagaaaatgacataattgaatgtaatc 1502617  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 20691322 - 20691370
Alignment:
Q  71 actggtaataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    |||| ||||||| |||||||||||||||||| | ||||||| |||||||    
T  20691322 actgataataatttgagaaaatgacataattcagtgtaatcatatgtgt 20691370  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 30847781 - 30847715
Alignment:
Q  66 ctgacactggtaataatgtgagaaaatgacataattaaatgtaatcgtatgtgttagttttgcacac 132  Q
    ||||||||| ||||||| ||| |||||||||||||| ||||||||| ||||||| ||| ||| ||||    
T  30847781 ctgacactgctaataatttgaaaaaatgacataattcaatgtaatcatatgtgtcagtgttgaacac 30847715  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 31667426 - 31667468
Alignment:
Q  69 acactggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  31667426 acactggtaataattttagaaaatgacataattaaatgtaatc 31667468  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 29230064 - 29230107
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaat 110  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||    
T  29230064 tgacaccggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11571593 - 11571629
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcg 112  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  11571593 taataatttgagaaaatgacataattcaatgtaatcg 11571629  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 8457927 - 8457968
Alignment:
Q  70 cactggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  8457927 cactggtaataatttgagaaaatgacataattgaatgtaatc 8457968  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 5654650 - 5654607
Alignment:
Q  68 gacactggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||    
T  5654650 gacactgataataatttgagaaaatgacataattcaatgtaatc 5654607  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 18513292 - 18513249
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||    
T  18513292 taataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 40224544 - 40224506
Alignment:
Q  81 atgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  40224544 atgtgagaaaatgacataatttaatgtaatcatatgtgt 40224506  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 2976700 - 2976737
Alignment:
Q  74 ggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  2976700 ggtaataatttgagaaaatgacataattgaatgtaatc 2976737  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 5110016 - 5109971
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaatcg 112  Q
    ||||||||||||| || ||| ||||||||||||||||||| |||||    
T  5110016 tgacactggtaattatttgaaaaaatgacataattaaatgcaatcg 5109971  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 14465359 - 14465302
Alignment:
Q  62 ggcactgacactggtaataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    ||||| ||||| | ||||||| |||||||||||||||||| ||| ||||| |||||||    
T  14465359 ggcacggacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgt 14465302  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 38134466 - 38134414
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    |||||| | ||||||| |||||||||||||||||| ||||||||| |||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 10893395 - 10893354
Alignment:
Q  79 taatgtgagaaaatgacataattaaatgtaatcgtatgtgtt 120  Q
    |||| |||||||||||||||||| |||||||||| |||||||    
T  10893395 taatttgagaaaatgacataattgaatgtaatcgcatgtgtt 10893354  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 27112108 - 27112140
Alignment:
Q  67 tgacactggtaataatgtgagaaaatgacataa 99  Q
    |||||||||||||||| ||||||||||||||||    
T  27112108 tgacactggtaataatttgagaaaatgacataa 27112140  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 36314678 - 36314634
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcgtatgtgtt 120  Q
    ||||||| ||||||||||||||| || ||||||||| ||||||||    
T  36314678 taataatttgagaaaatgacatatttcaatgtaatcatatgtgtt 36314634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 37775993 - 37776025
Alignment:
Q  79 taatgtgagaaaatgacataattaaatgtaatc 111  Q
    |||| ||||||||||||||||||||||||||||    
T  37775993 taatttgagaaaatgacataattaaatgtaatc 37776025  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 44172941 - 44172897
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcgtatgtgtt 120  Q
    ||||||| |||||||||||||||||| |||||||||  |||||||    
T  44172941 taataatttgagaaaatgacataattcaatgtaatcacatgtgtt 44172897  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 8148129 - 8148169
Alignment:
Q  77 aataatgtgagaaaatgacataattaaatgtaatcgtatgt 117  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  8148129 aataatttgagaaaatgacataattgaatgtaatcgtatgt 8148169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 30781357 - 30781310
Alignment:
Q  64 cactgacactggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    |||||||||  |||||||| |||||||||||||||||||| |||||||    
T  30781357 cactgacacgtgtaataatttgagaaaatgacataattaattgtaatc 30781310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 9024225 - 9024184
Alignment:
Q  78 ataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgt 9024184  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 18570980 - 18571023
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcgtatgtgt 119  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||    
T  18570980 taataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 32843716 - 32843756
Alignment:
Q  71 actggtaataatgtgagaaaatgacataattaaatgtaatc 111  Q
    ||||||| |||| |||||||||||||||||| |||||||||    
T  32843716 actggtagtaatatgagaaaatgacataattgaatgtaatc 32843756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 28296336 - 28296380
Alignment:
Q  76 taataatgtgagaaaatgacataattaaatgtaatcgtatgtgtt 120  Q
    ||||||| |||||||||||||||||| |||||| || ||||||||    
T  28296336 taataatttgagaaaatgacataattcaatgtactcatatgtgtt 28296380  T

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