View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19618_low_10 (Length: 466)
Name: NF19618_low_10
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 20475885 - 20476234
Alignment:
| Q |
10 |
attattctggttttagaacattgaatggcacatttaatattgagaaacatgaatctggatttggttataggcttggatattgtgtgaaagattctcctac |
109 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20475885 |
attatcctggttttagaacattgagtggcacatttaatattgagaagcatgaatctggatttggttataggcttggatattgtgtgaaagattctcctac |
20475984 |
T |
|
| Q |
110 |
ttgtttggatattgggagggctcatgaagaagttgaagatgagggtggatcacgtttacatttgactcatcaagtggcttttgaggttgtgtttgttgat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20475985 |
ttgtttggatattgggagggctcatgaagaagttgaagatgaaggtggatcacgtttacatttgactcatcaagtggcttttgcagttgtgtttgttgat |
20476084 |
T |
|
| Q |
210 |
gctgcttcttatgaagctggaattattaagtctgttgcttgatacattcattgttaattacttcttgttatgatgaataattactttgagctagcattaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20476085 |
gctgcttcttatgaagctggaattattaagtctgttgcttgataccttcattgttaattacttcttgttatgatgaataattactttgagctagcattaa |
20476184 |
T |
|
| Q |
310 |
gtaatcattgaataggtaattgttgttcatgtaatgtgttccttccttaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20476185 |
gtaatcattgaataggtaattgttgttcatgtaatgtgttccttccttaa |
20476234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 413
Target Start/End: Original strand, 20476428 - 20476481
Alignment:
| Q |
360 |
ctaaataaatggggagggaaaagcaagttataagagtgattttcggtaaaacaa |
413 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| ||||||||||||||| |
|
|
| T |
20476428 |
ctaaataaatggggagggaaaagcgatttataggagtggttttcggtaaaacaa |
20476481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 20493716 - 20493814
Alignment:
| Q |
26 |
aacattgaatggcacatttaatattgagaaacatgaatctggatttggttataggcttggatattgtgtgaaagattctcctacttgtttggatattgg |
124 |
Q |
| |
|
||||||||| || | |||||||||| ||||||||| ||||||||||||||||| | || | |||||| | | ||||||||||||||||||||||| |
|
|
| T |
20493716 |
aacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggatattgg |
20493814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 20505873 - 20505909
Alignment:
| Q |
215 |
ttcttatgaagctggaattattaagtctgttgcttga |
251 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20505873 |
ttcttatgaagatggaattattaagtctgttgcttga |
20505909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 20493876 - 20493909
Alignment:
| Q |
195 |
gttgtgtttgttgatgctgcttcttatgaagctg |
228 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
20493876 |
gttgtgtttgttgatgctgctacttatgaagctg |
20493909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University