View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_14 (Length: 419)
Name: NF19618_low_14
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 33 - 406
Target Start/End: Complemental strand, 8297012 - 8296632
Alignment:
| Q |
33 |
agggaccattgtaaatatcttttatcaaacgtattttgtttttgaaaaaatcaaacatannnnnnncttgaatcatactacctaatttgaaagtcatata |
132 |
Q |
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| T |
8297012 |
agggaccattgtaaatatcttttatcaaacgtattttgtttttgaaaaaatcaaacatatttttttcttgaatcatactacctaatttgaaagtcatata |
8296913 |
T |
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| Q |
133 |
gtatggtttgtacnnnnnnnnn------gtaatgtatcatactatcatttgtggttggtttacaatataataaactttcgcaatcagtctctaaaattat |
226 |
Q |
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| T |
8296912 |
gtatggtttgtacaaaaaaaaaaaaaaggtaatgtatcatactatcatttgtagttggtttacaatataataaactttcgcaatcagtctctaaaattat |
8296813 |
T |
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| Q |
227 |
cgagtttacaagaaaacttttacaatannnnnnnnn-cttactcgaaaacttttgcaataattgctcnnnnnnnctaatgagaatgataacatgtagaca |
325 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
8296812 |
cgagtttacacgaaaacttttacaatattttttttttcttactcgaaaacttttgcaataattgctcaaaaaaactaatgagaataataacatgtagaca |
8296713 |
T |
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| Q |
326 |
ggtggggaacaaagaaccaaatggcatgcattttagcgcaattaccggctatttgattgattcttgtttctgctacggcct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8296712 |
ggtggggaacaaagaaccaaatggcatgcattttagcgcaattaccggctatttgattgattcttgtttctgctacggcct |
8296632 |
T |
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