View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_15 (Length: 413)
Name: NF19618_low_15
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 1882963 - 1883351
Alignment:
| Q |
18 |
ccaagtggcatatttttaatcataagaggaatgtttttgtgacataacaatattgaataacgaactaaaagaatnnnnnnnnngtgagctgaaaatgaaa |
117 |
Q |
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| T |
1882963 |
ccaagtggcatatttttaatcataagaggaatgtttttgtgacataacaatattgaataaccaactaaaagaataaaaaaaa-gtgagctgaaaatgaaa |
1883061 |
T |
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| Q |
118 |
agacatgtatggtgaggcataaagacactgaaactggcattgtccttacttatacagttatacatacatttctatcatccaatccaaatctaatatactc |
217 |
Q |
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| T |
1883062 |
agacatgtatggtgaggcataaagacactgaaactggcattgtccttacttatacagttatacatacatttctatcatccaatccaaatctaatatactc |
1883161 |
T |
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| Q |
218 |
ataacttcattcactatttaactcattagcattactactatatgcccatttcatcacagcctgtaacacctccaacaattttttgttctatgttttaaca |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1883162 |
ataacttcattcactgtttaactcattagcattactactatatgcccatttcatcacagcctgtaacacctccaacaattttttgttctatgttttaaca |
1883261 |
T |
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| Q |
318 |
agaaaccgacaattctttaagataacttaaaatacttccaa-----ccattccatgtgtttcttcctattttcactcaattttatatatt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1883262 |
agaaaccgacaattctttaagataacttaaaatacttccaaccattccattccatgtgtttcttcctattttcactcaattttatatatt |
1883351 |
T |
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