View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_16 (Length: 404)
Name: NF19618_low_16
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 3381747 - 3381353
Alignment:
| Q |
10 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
109 |
Q |
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| T |
3381747 |
gaagaatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattgact |
3381648 |
T |
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| Q |
110 |
tgtgttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
209 |
Q |
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| T |
3381647 |
tgagttggtttattcaagtaccgctctattgctttcccgattaatgaatgagggaacaatatcgtaaacacaatctcctcttcttcttcttatttggtgt |
3381548 |
T |
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| Q |
210 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
309 |
Q |
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| T |
3381547 |
tgcaagtgtatcaacaagttcatatattcttgtccgatgagtttaaagatcttcatgatctaatcctacaaaagggttaacaaataaaatttgtagaact |
3381448 |
T |
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| Q |
310 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatc |
404 |
Q |
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| T |
3381447 |
cccatcttcatgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatc |
3381353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 1489079 - 1488840
Alignment:
| Q |
14 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcaggaaaaatctcttaagaaacctctcttcaaattcataccaatttgaattga-cttgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||| | ||| |
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| T |
1489079 |
aatatggcaatagttgtcttggcctccatgaatctgttgtgcgggaaaaatttcttaagaaatctctcttaaaattcataccaatttgaattgaccatgt |
1488980 |
T |
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| Q |
113 |
gttggtttattcaagtaccgctctattgctttcccgattaatgaatg-agggaacaatatcgtaaacacaatctcc---------tcttcttcttcttat |
202 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||| | |
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| T |
1488979 |
gttggtttatctaagtaccgctttgttgctttcccgattaatgaatgaaggcaacaatatcgtaaacacaatctcctcctcctcttcttcttctccttct |
1488880 |
T |
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| Q |
203 |
ttggtgttgcaagtgtatcaacaagttcatatattcttgt |
242 |
Q |
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| T |
1488879 |
ttggtgttgcaattgtaccaacaagttcatatattcttgt |
1488840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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