View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_18 (Length: 392)
Name: NF19618_low_18
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 30395202 - 30395558
Alignment:
| Q |
20 |
ctttcttgaccatctggcttccattccggattgtgttttgcatcttttcctcgcggctgaatgtttccccgtgtttcattggcttcagcattttctgaca |
119 |
Q |
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| T |
30395202 |
ctttcttgaccatcaggcttccattccggattgtgttttgcatcttttcctcgcgactgaatgtttccccgtgtttcattggcttcagcattttctgaca |
30395301 |
T |
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| Q |
120 |
tttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttgtgattaccactgtaaataatttctcttatgttgccatcatgtga |
219 |
Q |
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| T |
30395302 |
tttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttatgattaccactgtaaataatttctcttatgttgccatcatgtga |
30395401 |
T |
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| Q |
220 |
tctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgccttttacttgtttttggccatattttctc |
319 |
Q |
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| T |
30395402 |
tctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgccttttacttgtttttggccatattttctc |
30395501 |
T |
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| Q |
320 |
caattataaccatcctgtaaggtctttgctcctgctgcatgagatatctctttctgt |
376 |
Q |
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| T |
30395502 |
caattataaccatcctgtaaggtctttgctcctgctgcatgagatatctctttctgt |
30395558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 91 - 376
Target Start/End: Original strand, 30408934 - 30409219
Alignment:
| Q |
91 |
tgtttcattggcttcagcattttctgacatttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttgtgattaccactgtaa |
190 |
Q |
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| T |
30408934 |
tgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacttgaatgtggttttgcatggttatgattacccttgtaa |
30409033 |
T |
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| Q |
191 |
ataatttctcttatgttgccatcatgtgatctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgc |
290 |
Q |
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| T |
30409034 |
ataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactac |
30409133 |
T |
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| Q |
291 |
cttttacttgtttttggccatattttctccaattataaccatcctgtaaggtctttgctcctgctgcatgagatatctctttctgt |
376 |
Q |
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| T |
30409134 |
cttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagacatctctttctgt |
30409219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 30408836 - 30408905
Alignment:
| Q |
20 |
ctttcttgaccatctggcttccattccggattgtgttttgcatcttttcctcgcggctgaatgtttcccc |
89 |
Q |
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| T |
30408836 |
ctttcttgaccatcaggcttccgttccggattgtgttttgcatctttcccccatgactgaatgtttcccc |
30408905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 26332563 - 26332619
Alignment:
| Q |
277 |
cggatattcactgccttttacttgtttttggccatattttctccaattataaccatc |
333 |
Q |
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| T |
26332563 |
cggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
26332619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 31615355 - 31615428
Alignment:
| Q |
260 |
catttgtagtagcttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatc |
333 |
Q |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 26967067 - 26967128
Alignment:
| Q |
272 |
cttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatc |
333 |
Q |
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| T |
26967067 |
cttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatc |
26967128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 2056390 - 2056298
Alignment:
| Q |
243 |
gacaattagactgattacatttgtagtagcttctcggatattcactgccttttacttgtttttggccatattttctccaattataaccatcct |
335 |
Q |
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| T |
2056390 |
gacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattatatccatcct |
2056298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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