View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_low_20 (Length: 379)

Name: NF19618_low_20
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_low_20
NF19618_low_20
[»] chr5 (2 HSPs)
chr5 (23-371)||(28753886-28754233)
chr5 (23-246)||(6133317-6133537)
[»] chr8 (2 HSPs)
chr8 (47-368)||(3807820-3808140)
chr8 (18-246)||(26946100-26946324)
[»] chr2 (2 HSPs)
chr2 (25-368)||(9010983-9011321)
chr2 (25-243)||(38415336-38415548)
[»] chr7 (1 HSPs)
chr7 (18-246)||(1756198-1756423)
[»] chr3 (1 HSPs)
chr3 (38-255)||(28721359-28721577)
[»] chr6 (5 HSPs)
chr6 (37-353)||(21052589-21052912)
chr6 (37-297)||(21075811-21076078)
chr6 (161-267)||(1120834-1120940)
chr6 (18-136)||(1120717-1120836)
chr6 (43-122)||(4742358-4742438)
[»] chr4 (1 HSPs)
chr4 (38-219)||(30253432-30253614)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 23 - 371
Target Start/End: Original strand, 28753886 - 28754233
Alignment:
Q  23 agcaaaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgt 122  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||| | || | || ||||||||||||||||||||||| ||||||||||||||    
T  28753886 agcaaaagctataagcttttttccttataagctacaacttttattgaaagagagcatctatgaataatacaaatcttccaaactagaaacaatacaatgt 28753985  T
Q  123 ctcaatttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtat 222  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||||||||    
T  28753986 ctcaatttgataaccattatcacagaaaaatgattatataccatttgataaacattttagaagatcttattacaacttcgatatatttgaatacaagtat 28754085  T
Q  223 gcccctatccattatagaaaactaaaaccttgagtttttccttcaaccgtacaaaaaatttcttccacgctttcccgtctgcatattttgcttggagttg 322  Q
    ||||| | |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||| || ||||  |||||| | ||||||||||| ||    
T  28754086 gcccccacccattatagaaaactaaatccttgagtttttccttcagccgtacaaaaaa-ttcttccaggcattccaatctgcaaaatttgcttggagctg 28754184  T
Q  323 tgatgtaaaataagaaataggtaaggtaaccaatgatggagaggatgga 371  Q
      |||||||||||||||||||| ||||||  | ||||| ||||||||||    
T  28754185 caatgtaaaataagaaataggtcaggtaattattgatgtagaggatgga 28754233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 6133317 - 6133537
Alignment:
Q  23 agcaaaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaata-atacaaatcttccaaactaaaaacaatacaatg 121  Q
    ||||| ||||||||||||| |||||||||||||| |  ||||| ||||||| ||||||||||||   |||||||| |||||||||| || |||||||| |    
T  6133317 agcaatagctataagctttttttcttataagctaaagcttttactgaaagagaacaccaatcaaacgatacaaatattccaaactagaa-caatacaagg 6133415  T
Q  122 tctcaatttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagta 221  Q
    ||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||   ||| |||| ||||||||||||| | |||||||||||||    
T  6133416 tctcaatgtgataaccattatcatagaaaaaaaattataaaccatttgataaacatttc---agatcttattacaacttcaatacatttgaatacaagta 6133512  T
Q  222 tgcccctatccattatagaaaacta 246  Q
    |||||| | ||||||||||||||||    
T  6133513 tgcccccacccattatagaaaacta 6133537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 47 - 368
Target Start/End: Original strand, 3807820 - 3808140
Alignment:
Q  47 ttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataactattatcaca 146  Q
    ||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||  ||||| |||||||||    
T  3807820 ttataagctacaacttttattgaaagagaacacctatcaataatacaaatcttccaaagtagaaacaatacaatgtctcaattcaataaccattatcaca 3807919  T
Q  147 gaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccattatagaaaacta 246  Q
    |||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||| | ||||||||||||||||    
T  3807920 gaaaaacaattataaaccagttgataaacatttcagaagatcttattacaacttcaatatattggaatacaagtatgcccccacccattatagaaaacta 3808019  T
Q  247 aaaccttgagtttttccttcaaccgtacaaaaaatttcttccacgctttcccgtctgcatattttgcttggagttgtgatgtaaaataagaaataggtaa 346  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||  | ||||||||||| ||   ||||||||||||||||||  |    
T  3808020 aaaccttgagtttttccttcagccgtacaaaaaa-ttcttccaccctttccagtctgctaaatttgcttggagctgcagtgtaaaataagaaataggcca 3808118  T
Q  347 ggtaaccaatgatggagaggat 368  Q
     ||||| |  ||||||||||||    
T  3808119 agtaactatcgatggagaggat 3808140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 26946100 - 26946324
Alignment:
Q  18 gacaaagcaaaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatac 117  Q
    |||| ||||| ||||||||| ||| | ||| ||||||||||| ||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||    
T  26946100 gacagagcaatagctataagttttttctct-ataagctacaacttttattgaaagagaacaccaatcaacaatacaaatattccaaactagaaacaatac 26946198  T
Q  118 aatgtctcaatttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaataca 217  Q
    ||| ||||||||||||||| ||| ||| || |||| |||||||||||||||| ||||||||||   ||| |||| ||||||||||||||| |||||||||    
T  26946199 aatatctcaatttgataaccattttcataggaaaaaaattataaaccatttgttaaacatttc---agatcttattacaacttcaatatatttgaataca 26946295  T
Q  218 agtatgcccctatccattatagaaaacta 246  Q
    |||||||||  | ||||||||||||||||    
T  26946296 agtatgccctcacccattatagaaaacta 26946324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 368
Target Start/End: Complemental strand, 9011321 - 9010983
Alignment:
Q  25 caaaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtct 124  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||| |||  | ||||||||||||||| |||||||||| |||||||||||||||     
T  9011321 caaaagctataagctttttttcttataagctacaactttttttgaaagagaacttctatcaataatacaaattttccaaactagaaacaatacaatgtc- 9011223  T
Q  125 caatttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatac-aagtatg 223  Q
        |||||| | ||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||    
T  9011222 ----ttgatacccattgtcacagaaacataattataaaccatctgataaacatttcagaagatcttattacaatttcaatatatttgaatacaaagtatg 9011127  T
Q  224 cccctatccattatagaaaactaaaaccttgagtttttccttcaaccgtacaaaaaatttcttccacgctttcccgtctgcatattttgcttggagttgt 323  Q
    || | | |||||||| ||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||| ||||||| | ||||||||||| ||     
T  9011126 ccaccacccattataaaaaactaaaaccttgagtttttcattcagccgtacaaaaaa-ttcttccatgctttccagtctgcaaaatttgcttggagctgc 9011028  T
Q  324 gatgtaaaataagaaataggtaaggtaaccaatgatggagaggat 368  Q
     ||||||||||||| |||||| ||||||| | |||||||||||||    
T  9011027 aatgtaaaataagatataggtcaggtaactattgatggagaggat 9010983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 38415548 - 38415336
Alignment:
Q  25 caaaagctataagctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtct 124  Q
    |||||||||||| |||| |||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||| | |||||||| |||        
T  38415548 caaaagctataatctttttttcttataagctataacttttattgaaagagaacacctatcaataatacaaatcttccaaacaagaaacaataaaat---- 38415453  T
Q  125 caatttgataactattatcacagaaaaa--taattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtat 222  Q
        |||||||| ||| ||||| |||||  ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  38415452 ----ttgataaccattgtcacaaaaaaaaataattataaactatttgataaacatttcagaagatcttattacaacttcaatatacttgaatacaagtat 38415357  T
Q  223 gcccctatccattatagaaaa 243  Q
    ||||| | |||||||| ||||    
T  38415356 gcccccacccattataaaaaa 38415336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 1756423 - 1756198
Alignment:
Q  18 gacaaagcaaaagctataagctttg-tttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaata 116  Q
    |||| ||||| |||||||||||||  ||||||||||||||||| ||||||||||||  ||||||||||||  |||||||| |||||||||| ||||||||    
T  1756423 gacagagcaatagctataagcttttctttcttataagctacaacttttattgaaagtgaacaccaatcaaccatacaaatattccaaactagaaacaata 1756324  T
Q  117 caatgtctcaatttgataactattatcacagaaaaataattataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatac 216  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||   ||| |||| ||||||||||||||| ||||||||    
T  1756323 caatgtctcaatttgataaccattatcatagaaaaaaaattataaaccatttgataaacatttc---agatcttattacaacttcaatataattgaatac 1756227  T
Q  217 aagtatgcccctatccattatagaaaacta 246  Q
    |||||||| || | ||||||||||||||||    
T  1756226 aagtatgcgccca-ccattatagaaaacta 1756198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 28721577 - 28721359
Alignment:
Q  38 ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataact 137  Q
    |||| ||||||||||||| |||  |||||||||||  |||  | |||||||||||||||||| |||| || ||||||| ||||||||||||||||| ||     
T  28721577 ctttttttcttataagctgcaacctttattgaaagcgaac--ctatcaataatacaaatctttcaaattagaaacaattcaatgtctcaatttgattacc 28721480  T
Q  138 attatcacagaaaaata---attataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccat 234  Q
     |||||||| |||||||   |||||||||||||||||||||||||  ||||| |||| ||||||||||||||| ||||||||||||||||||| | ||||    
T  28721479 cttatcacataaaaatatttattataaaccatttgataaacattttggaagatcttattacaacttcaatatatttgaatacaagtatgcccccacccat 28721380  T
Q  235 tatagaaaactaaaaccttga 255  Q
    |||||||||||||||||||||    
T  28721379 tatagaaaactaaaaccttga 28721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 353
Target Start/End: Original strand, 21052589 - 21052912
Alignment:
Q  37 gctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgtctcaatttgataa 135  Q
    ||||| |||||||||||||| || ||| ||||||||| |||||| | |||||| |||| |||||||||||||  |||| |||||||||| ||||||||||    
T  21052589 gctttttttcttataagctaaaactttcattgaaagagaacacctagcaataacacaagatcttccaaactaggaacattacaatgtctaaatttgataa 21052688  T
Q  136 ctattatcacagaaaaataattataaaccatttgataa-acatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcc----cctat 230  Q
    | |||||||  ||||||||||| |||||||||||||||  ||||||| |||| |||| ||||||||||||||| |||||||||||| | ||    || ||    
T  21052689 ccattatcatggaaaaataattctaaaccatttgataacccatttcacaagatcttattacaacttcaatatatttgaatacaagttttccgccacccat 21052788  T
Q  231 ccattatagaaaactaaaaccttg--agtttttccttcaaccgtacaaaaaatttcttccacgctttcccgtctgcatattttgcttggagttgtgatgt 328  Q
    ||||  || | ||||||||||| |  |||||||||||||||||| |||| || |||||| |||||||||  || ||| | | || ||||||  || || |    
T  21052789 ccatcgtatataactaaaacctggacagtttttccttcaaccgttcaaagaa-ttcttctacgctttccgatcagcaaaatctggttggagccgtaattt 21052887  T
Q  329 aaaataagaaataggtaaggtaacc 353  Q
    |||||||||||||||  ||||||||    
T  21052888 aaaataagaaataggccaggtaacc 21052912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 297
Target Start/End: Original strand, 21075811 - 21076078
Alignment:
Q  37 gctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgtctcaatttgataa 135  Q
    ||||| |||||||||||||| || ||| ||||||||| |||||| | |||||| |||| |||||||||||||  |||| |||||||||| ||||||||||    
T  21075811 gctttttttcttataagctaaaactttcattgaaagagaacacctagcaataacacaagatcttccaaactaggaacattacaatgtctaaatttgataa 21075910  T
Q  136 ctattatcacagaaaaataattataaaccatttgataa-acatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcc----cctat 230  Q
    | |||||||  ||||||||||| |||||||||||||||  ||||||| |||| |||| ||||||||||||||| |||||||||||| | ||    || ||    
T  21075911 ccattatcatggaaaaataattctaaaccatttgataacccatttcacaagatcttattacaacttcaatatatttgaatacaagttttccgccacccat 21076010  T
Q  231 ccattatagaaaactaaaacctt--gagtttttccttcaaccgtacaaaaaatttcttccacgctttcc 297  Q
    ||||  || | ||||||||||||  ||||||||||||||||||| |||| || |||||| |||||||||    
T  21076011 ccatcgtatataactaaaaccttgagagtttttccttcaaccgtccaaagaa-ttcttctacgctttcc 21076078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 267
Target Start/End: Original strand, 1120834 - 1120940
Alignment:
Q  161 aaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaagtatgcccctatccattatagaaaactaaaaccttgagtttt 260  Q
    |||||||||||||||||||| ||||| |||| ||||| |||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1120834 aaccatttgataaacatttccgaagatcttattacaatttcaatatataagaatacaagtatgcccccatccattatagaaaactaaaaccttgagtttt 1120933  T
Q  261 tccttca 267  Q
    |||||||    
T  1120934 tccttca 1120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 1120717 - 1120836
Alignment:
Q  18 gacaaagcaaaagctataag---ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaa 114  Q
    |||| ||||| |||||||||   |||| ||||||||||||| ||| ||||||||||||  ||   | ||||||||| ||||||||||| |||| ||||||    
T  1120717 gacagagcaatagctataagattctttttttcttataagctgcaacttttattgaaagcgaat--ctatcaataattcaaatcttccagactagaaacaa 1120814  T
Q  115 tacaatgtctcaatttgataac 136  Q
    ||||||||||||||||||||||    
T  1120815 tacaatgtctcaatttgataac 1120836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 4742358 - 4742438
Alignment:
Q  43 tttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaa-atcttccaaactaaaaacaatacaatgt 122  Q
    |||||||||||||| || | ||||||||||| |||||| | |||||| |||| |||||||||||||  |||||||||||||    
T  4742358 tttcttataagctaaaactattattgaaagagaacacctagcaataacacaagatcttccaaactaggaacaatacaatgt 4742438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 30253432 - 30253614
Alignment:
Q  38 ctttgtttcttataagctacaaattttattgaaagaaaacaccaatcaataatacaaatcttccaaactaaaaacaatacaatgtctcaatttgataact 137  Q
    |||| ||||||||||||| |||  |||||||||||  |||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||| ||     
T  30253432 ctttttttcttataagctgcaacgtttattgaaagcgaac--ctatcaataatacaaatctttcagactagaaacaatacaatgtctcaatttgattacc 30253529  T
Q  138 attatcacagaaaaata---attataaaccatttgataaacatttcagaagaacttactacaacttcaatatacttgaatacaag 219  Q
    ||||||||| |||||||   |||||||||||||||||||||||||| |||||  ||| | |||||| |||||| || ||||||||    
T  30253530 attatcacataaaaatatttattataaaccatttgataaacatttcggaagatgttattgcaactttaatatatttcaatacaag 30253614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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