View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_21 (Length: 377)
Name: NF19618_low_21
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 11861238 - 11861588
Alignment:
| Q |
1 |
gaaggatacaatggattacactgctcctgaaatcaaaacttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgagcgcatcgag |
100 |
Q |
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| T |
11861238 |
gaaggatacaatgaagtacgctgctcctgaaatcaaaacttctaattcacaattgaaacccttctccaaattgaagtccatggtagttgagcgcatcgac |
11861337 |
T |
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| Q |
101 |
cattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattagagattgttttaatttaaagtctctgccacaaagtttcaagt |
200 |
Q |
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| T |
11861338 |
cattctccaccagaaagatggctcaaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctctaccacaaggtttcaagt |
11861437 |
T |
|
| Q |
201 |
tattgagttcgcttcaatcactttctattgaaagatgtgaagaacttgatctttgcaattacaattttaaaactgaatgggagggtctgaaaaaacttcg |
300 |
Q |
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| T |
11861438 |
ctttgagttcactccaaacactcactattgaaagatgtcaagaacttgatcttgacaa--aca----tccaaatgagtgggagggtctgaaaaaccttcg |
11861531 |
T |
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| Q |
301 |
ttctcttacattaaggagtattccgaaacttaagtctcttccatggggagttgaaaa |
357 |
Q |
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| T |
11861532 |
ttctcttacattaaggagtattccaaaacttaagtcccttccatggggagttgaaaa |
11861588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 60 - 248
Target Start/End: Original strand, 11829171 - 11829359
Alignment:
| Q |
60 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
159 |
Q |
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| T |
11829171 |
ccttctcgaaattgaagtccatggtaattgagcgcattgaccaatctccaccagagagttggcttaaaaacttcatttcacttgaggaacttcacattag |
11829270 |
T |
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| Q |
160 |
agattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtgaagaacttg |
248 |
Q |
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| T |
11829271 |
agattgttttattttggagtctctaccacaaggtttcaagtttttaagctcactcatatcactttctattgaaagatgtgaacaacttg |
11829359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 60 - 359
Target Start/End: Complemental strand, 11901221 - 11900928
Alignment:
| Q |
60 |
ccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttcacttgagaaacttcacattag |
159 |
Q |
| |
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|||| ||||||||||| || |||||||||||||| || ||||| |||| ||||| | ||||| |||||||| |||| |||||| ||||||||||||| |
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| T |
11901221 |
ccttttccaaattgaaatcaatggtaattgagcgtattgagcaaactccaccagagaggtggcttaaaaactttgtttcgcttgaggaacttcacattag |
11901122 |
T |
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| Q |
160 |
agattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtgaagaacttgatctttgcaat |
259 |
Q |
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| T |
11901121 |
agattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttcactcatatcactcactattgagagatgtgaagaacttgatct------c |
11901028 |
T |
|
| Q |
260 |
tacaattttaaaactgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctcttccatggggagttgaaaact |
359 |
Q |
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| T |
11901027 |
gacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattcccaaactcaagtcccttccaagggaaattgaaaact |
11900928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 12040072 - 12040368
Alignment:
| Q |
40 |
ttctaattcacaattgaaatccttctccaaattgaagtccatggtaattgagcgcatcgagcattctcccccagaaaaatggctcaaaaacttcatttca |
139 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||| || || || ||||| || | | |||||| ||||||||||||||| |
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| T |
12040072 |
ttctaattcacaatcacaacccttctccaaattgaagtccatggtaattgagcgtattgaccaatctccaccgaagagatggcttaaaaacttcatttca |
12040171 |
T |
|
| Q |
140 |
cttgagaaacttcacattagagattgttttaatttaaagtctctgccacaaagtttcaagttattgagttcgcttcaatcactttctattgaaagatgtg |
239 |
Q |
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||| || ||||||||||| |||||||||| |||| |||||||| || || ||||| || |||||||| || || |||| |||||||||||||| |
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| T |
12040172 |
cttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaacactcactattgaaagatgtc |
12040271 |
T |
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| Q |
240 |
aagaacttgatctttgcaattacaattttaaaactgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctct |
339 |
Q |
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| T |
12040272 |
aacaacttgatctt---gagtcc---tccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtccct |
12040365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 11829404 - 11829490
Alignment:
| Q |
272 |
actgaatgggagggtctgaaaaaacttcgttctcttacattaaggagtattccgaaacttaagtctcttccatggggagttgaaaac |
358 |
Q |
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| T |
11829404 |
actgaatgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttccatggggagttgaaaac |
11829490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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