View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_low_22 (Length: 368)

Name: NF19618_low_22
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_low_22
NF19618_low_22
[»] chr2 (1 HSPs)
chr2 (43-352)||(39191445-39191758)
[»] chr8 (6 HSPs)
chr8 (16-204)||(11544422-11544604)
chr8 (222-352)||(11544589-11544719)
chr8 (249-352)||(22689142-22689245)
chr8 (222-352)||(22655785-22655915)
chr8 (119-204)||(22655900-22655985)
chr8 (109-174)||(22689290-22689355)
[»] chr3 (38 HSPs)
chr3 (222-352)||(19956603-19956733)
chr3 (19-201)||(24839564-24839740)
chr3 (222-352)||(26653667-26653797)
chr3 (16-201)||(19944066-19944245)
chr3 (247-352)||(19838937-19839042)
chr3 (247-352)||(20036072-20036177)
chr3 (31-204)||(19956451-19956618)
chr3 (96-204)||(19838819-19838927)
chr3 (85-204)||(19818975-19819094)
chr3 (249-352)||(19951670-19951773)
chr3 (85-204)||(20036187-20036306)
chr3 (77-204)||(26653555-26653682)
chr3 (222-352)||(19819079-19819209)
chr3 (246-352)||(19944260-19944366)
chr3 (246-352)||(20015670-20015776)
chr3 (246-352)||(24839443-24839549)
chr3 (246-352)||(26647547-26647653)
chr3 (228-352)||(19812808-19812932)
chr3 (105-204)||(17115148-17115247)
chr3 (85-204)||(19832284-19832403)
chr3 (244-352)||(19832411-19832519)
chr3 (105-201)||(26647436-26647532)
chr3 (77-201)||(26652122-26652246)
chr3 (249-352)||(20033803-20033906)
chr3 (105-204)||(20046555-20046654)
chr3 (107-201)||(19951558-19951652)
chr3 (81-171)||(19849407-19849497)
chr3 (246-352)||(19858615-19858721)
chr3 (222-352)||(20046639-20046769)
chr3 (104-185)||(19812717-19812798)
chr3 (263-352)||(19854060-19854149)
chr3 (264-352)||(19849557-19849645)
chr3 (105-204)||(20015785-20015884)
chr3 (104-201)||(19853931-19854028)
chr3 (31-166)||(19858436-19858565)
chr3 (109-182)||(19989967-19990040)
chr3 (265-350)||(19990087-19990172)
chr3 (134-201)||(20033924-20033991)
[»] chr5 (5 HSPs)
chr5 (246-352)||(9815577-9815683)
chr5 (246-352)||(26354396-26354502)
chr5 (263-352)||(38435058-38435147)
chr5 (85-204)||(9815449-9815568)
chr5 (106-204)||(26354511-26354609)
[»] chr1 (4 HSPs)
chr1 (105-201)||(1717652-1717748)
chr1 (249-352)||(1717766-1717869)
chr1 (106-204)||(38483409-38483507)
chr1 (246-352)||(38483516-38483620)
[»] chr7 (4 HSPs)
chr7 (106-204)||(12495575-12495677)
chr7 (106-204)||(12519379-12519478)
chr7 (106-204)||(12579673-12579773)
chr7 (264-352)||(12581822-12581910)
[»] chr4 (2 HSPs)
chr4 (109-202)||(6397323-6397418)
chr4 (276-316)||(6397284-6397324)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 352
Target Start/End: Complemental strand, 39191758 - 39191445
Alignment:
Q  43 atatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39191758 atatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctga 39191659  T
Q  143 t-aagtgt-ggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggatattggtctaaagaaggagaagaaggatttggat--aa 238  Q
    | |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||  ||    
T  39191658 taaagtgtagaaatgttttatccaaaggatgaaactttggtaccgcttaagaaggatttggatattggtctaaaaaagaaaaagaaggatttggataaaa 39191559  T
Q  239 caatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttaga 338  Q
     ||   |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  39191558 aaaaaatctctcatttgttatgtcattgagagtttcggagctagttggttttgagtctattgagcaatatcttccacatagagttgctatgcaatttgga 39191459  T
Q  339 atggatcaagatgt 352  Q
    ||||||||||||||    
T  39191458 atggatcaagatgt 39191445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 11544422 - 11544604
Alignment:
Q  16 atggagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttct 115  Q
    ||||||||||||||||| |||||||| || ||||||| ||||||||| |||| | ||||      ||||||||||| ||||| |||||||||||||||||    
T  11544422 atggagaccatgtactgatgaggtggcatttggttaaacccttgaaaattgataatgtg------aggttggcattagattcagctaaggatgattttct 11544515  T
Q  116 ttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    |||||| ||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  11544516 ttggcgcccatatgttcaatatgccgataagtttgaaatgttttatccaaatgatgaaactttggtaccgcttaagaaggatttggata 11544604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 11544589 - 11544719
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    ||||||||||||||||| ||   |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  11544589 aagaaggatttggataaaaaaaatctctcatttgttatgtcattgagagtttccgagctagttggttttgagtctattgagcaatatcttccacatagag 11544688  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||||||| ||||||||||||||||    
T  11544689 ttgctatgcaatttggaatggatcaagatgt 11544719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 22689245 - 22689142
Alignment:
Q  249 tcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaag 348  Q
    ||||||||||| | |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||| ||| ||||||||||||    
T  22689245 tcatttgttatatgcttgagagtttctgagctagttggatttgagtctatagagcaatatctaccacatagagttgctaggcagtttggaatggatcaag 22689146  T
Q  349 atgt 352  Q
    ||||    
T  22689145 atgt 22689142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 22655915 - 22655785
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    ||||||||||||||||  ||  |||||||||||||| | |  ||||| ||||| ||||| ||||||||||| ||||| ||  |||||||||||| |||||    
T  22655915 aagaaggatttggatacaaaaattctctcatttgttgtatgtttgagggtttctgagcttgttggatttgagtctatagaaaaatatcttccacgtagag 22655816  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    || ||||||||||| |||| |||||||||||    
T  22655815 tttctatgcaatttggaattgatcaagatgt 22655785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 22655985 - 22655900
Alignment:
Q  119 gcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    |||||||||||||| |||| |||||||||| |   |||||||||| || ||||||| |||||||||| ||||||||||||||||||    
T  22655985 gcgtccatatgttcgatattctgataagtgcgagctgttttatcctaatgatgaaattttggtaccatttaagaaggatttggata 22655900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 22689355 - 22689290
Alignment:
Q  109 attttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaa 174  Q
    ||||| |||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  22689355 attttatttggcgtccttatgttagatatgctgataagtgtggagtgttttatccaaaggatgaaa 22689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 19956603 - 19956733
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    ||||||||||||||||  ||  || ||||||||||||| | |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  19956603 aagaaggatttggatacaaaaattatctcatttgttatatgcttgagagtttccgagctggttggatttgagtctatagagcaatatcttccacatagag 19956702  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||||||| |||| |||||||||||    
T  19956703 ttgctatgcaatttggaattgatcaagatgt 19956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 24839740 - 24839564
Alignment:
Q  19 gagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttg 118  Q
    ||||||||||| ||||||||||| |||  |||||| |||||||| |||||| |||||      |||||||||| || || |  |  ||||||||| ||||    
T  24839740 gagaccatgtattgttgaggtggcataatgttaaggccttgaaaattgacaatgtga------ggttggcattagactcagtcatcgatgattttatttg 24839647  T
Q  119 gcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  24839646 gcgtccttatgttcaatatgttgataagtgtggagtgttttatccaaaggatgaaactttggtaccatttaagaaagatttgg 24839564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 26653667 - 26653797
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    ||||||||||||||||  ||  | |||||||||||||| | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  26653667 aagaaggatttggatacaaacatgctctcatttgttatatgcttgagagttgctgagctagttggatttgagtctattgagcaatatcttccacatagag 26653766  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||||||| |||| || ||||||||    
T  26653767 ttgctatgcaatttggaattgaccaagatgt 26653797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 19944066 - 19944245
Alignment:
Q  16 atggagaccatgtactgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttct 115  Q
    |||||||||||||| ||||||||||| |||  |||||| |||||||| |||||| ||||       |||||||||| ||||| ||||   |||||||| |    
T  19944066 atggagaccatgtattgttgaggtggcataatgttaaggccttgaaaattgacaatgtgg------ggttggcattagattcagctatcaatgattttat 19944159  T
Q  116 ttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    ||| ||||| ||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||| |||| || |||||||    
T  19944160 ttgccgtccttatgttcaatatgctgataagtgtggagtatattatccaaatgatgaaactttggtaccatttaaaaaagatttgg 19944245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 19838937 - 19839042
Alignment:
Q  247 tctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatca 346  Q
    ||||||||||||| | | | |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  19838937 tctcatttgttatatgccttagagtttccgagcttgttggatttgagtctatagagcaatatcttccacatagagttgctatgcaattcggaatggatca 19839036  T
Q  347 agatgt 352  Q
    ||||||    
T  19839037 agatgt 19839042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 352
Target Start/End: Complemental strand, 20036177 - 20036072
Alignment:
Q  247 tctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatca 346  Q
    ||||||||||||| | |||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  20036177 tctcatttgttatatgcttgagggtttctgagctggttggatttgagtctatagagcaatatcttccacatagagttgctatgcaatttggaattgatca 20036078  T
Q  347 agatgt 352  Q
    ||||||    
T  20036077 agatgt 20036072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 19956451 - 19956618
Alignment:
Q  31 tgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgt 130  Q
    |||| |||||| ||| |||||||||||||| |||||||| ||| |      || ||||||| || ||||||| |||||| ||||||||||||||||||||    
T  19956451 tgtttaggtggcataaggttaagcccttgatagttgacaatgtta------ggatggcattagactcggctatggatgactttctttggcgtccatatgt 19956544  T
Q  131 tcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    || |||| || |||| |||||  | ||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  19956545 tcgatattctcataaatgtgggctattttatccaaatgatgaaattttggtaccatttaagaaggatttggata 19956618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 19838819 - 19838927
Alignment:
Q  96 tcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaagg 195  Q
    ||||||| |||||| |||||||||||||||||||||| |||| |||||||||||| | ||||||||||||| ||||||| |||||||||| |||||| ||    
T  19838819 tcggctatggatgactttctttggcgtccatatgttcgatattctgataagtgtgaactgttttatccaaatgatgaaattttggtaccatttaagaggg 19838918  T
Q  196 atttggata 204  Q
    |||| ||||    
T  19838919 atttagata 19838927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 19818975 - 19819094
Alignment:
Q  85 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 184  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||   |||||||||| || |||| || |||||||||    
T  19818975 tggcattagactcggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgttttatccgaatgatggaattttggtacc 19819074  T
Q  185 acttaagaaggatttggata 204  Q
    | |||||| |||||||||||    
T  19819075 atttaagatggatttggata 19819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 19951670 - 19951773
Alignment:
Q  249 tcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaag 348  Q
    ||||||||||| | |||||||||||| |||||||||||  | || ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  19951670 tcatttgttatatgcttgagagtttctgagctagttggtatcgactctatagagcaatatcttccacatagagttgctatgcaatttgcaatggatcaag 19951769  T
Q  349 atgt 352  Q
    ||||    
T  19951770 atgt 19951773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 20036306 - 20036187
Alignment:
Q  85 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 184  Q
    ||||||| || ||||||| |||||| |||||||||||||||||||||| |||| ||||||||| || | || |||||||||| |||||||||||||||||    
T  20036306 tggcattagactcggctatggatgactttctttggcgtccatatgttcgatattctgataagtttgaactgctttatccaaatgatgaaactttggtacc 20036207  T
Q  185 acttaagaaggatttggata 204  Q
    | ||| |||| |||||||||    
T  20036206 atttacgaagtatttggata 20036187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 26653555 - 26653682
Alignment:
Q  77 tgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaact 176  Q
    ||||||||||||||| || || || |  |||||||||||||||||||||||||||  |||| || | |||||||||||||||||||||||  |||||| |    
T  26653555 tgtgaggttggcattagactcagcaattgatgattttctttggcgtccatatgttagatatcctaacaagtgtggaatgttttatccaaataatgaaatt 26653654  T
Q  177 ttggtaccacttaagaaggatttggata 204  Q
    | ||||||| ||||||||||||||||||    
T  26653655 tgggtaccatttaagaaggatttggata 26653682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 19819079 - 19819209
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    |||| |||||||||||  ||  |||||||||||||||| |  ||||||||||| ||||| ||||| ||||| || || ||||||||||||||||||||||    
T  19819079 aagatggatttggatacaaaaattctctcatttgttatatgtttgagagtttctgagcttgttggttttgagtccatagagcaatatcttccacatagag 19819178  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||| ||| |||| |||||||||||    
T  19819179 ttgctatgcagtttggaattgatcaagatgt 19819209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 19944260 - 19944366
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||||||  || | ||||    
T  19944260 ctctcatttgttatattcttgagagtttccgagctagttggatttgagtctatagaacaatatctaccatatagagttgctatgcaattcggatttgatc 19944359  T
Q  346 aagatgt 352  Q
    |||||||    
T  19944360 aagatgt 19944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 20015776 - 20015670
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | ||| |||||||||||||| ||||||||||| ||||| ||||| ||| | ||||| |||||||||||||||||| |||||||||    
T  20015776 ctctcatttgttatatgcttaagagtttccgagcttgttggatttgactctatagagcagtatttgccacacagagttgctatgcaatttggaatggatc 20015677  T
Q  346 aagatgt 352  Q
    |||||||    
T  20015676 aagatgt 20015670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 24839549 - 24839443
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||  || | ||||    
T  24839549 ctctcatttgttatattcttgagagtttctgagctagttggatttgagtctatagaacaatatctaccacatagagttgctatgcaattcggatttgatc 24839450  T
Q  346 aagatgt 352  Q
    |||||||    
T  24839449 aagatgt 24839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 26647547 - 26647653
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | |||||||||||| ||||| |||||||| || ||||| || || ||||| |||||||||||||||||||||||| |||||||||    
T  26647547 ctctcatttgttatatgcttgagagtttctgagcttgttggattcgactctatagaacagtatctgccacatagagttgctatgcaatttggaatggatc 26647646  T
Q  346 aagatgt 352  Q
    |||||||    
T  26647647 aagatgt 26647653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 19812808 - 19812932
Alignment:
Q  228 gatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgcta 327  Q
    ||||| ||||||||  | |||||||||||||| | |||||||  ||| |||||||||||  | || ||||| ||||||||||||||||||||||||||||    
T  19812808 gatttagataacaaaatgctctcatttgttatatgcttgagatgttctgagctagttggtatcgactctatagagcaatatcttccacatagagttgcta 19812907  T
Q  328 tgcaatttagaatggatcaagatgt 352  Q
    |||||||| |||| |||||||||||    
T  19812908 tgcaatttggaattgatcaagatgt 19812932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 17115148 - 17115247
Alignment:
Q  105 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    |||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||| | || || ||||||||||    
T  17115148 gatgattttctttggcgtccatacattagatatgctgataagtgtggaatgttttatccaaatgatgaaattttggtaccattcaaaaaagatttggata 17115247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 19832284 - 19832403
Alignment:
Q  85 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 184  Q
    ||||||| || | |||||||||||| |||||||||||||||||||||| |||| ||||||||||||   |||||||||| || |||| || |||||||||    
T  19832284 tggcattagacttggctaaggatgactttctttggcgtccatatgttcgatattctgataagtgtgagctgttttatccgaatgatggaattttggtacc 19832383  T
Q  185 acttaagaaggatttggata 204  Q
    | |||||| |||||||||||    
T  19832384 atttaagatggatttggata 19832403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 19832411 - 19832519
Alignment:
Q  244 ttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatgga 343  Q
    |||||||||||||||| |  ||||||||||| ||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||  || |||| ||    
T  19832411 ttctctcatttgttatatgtttgagagtttctgagcttgttggttttgagtccatagagcaatatcttccacatagagttgctatgcagattggaattga 19832510  T
Q  344 tcaagatgt 352  Q
    |||||||||    
T  19832511 tcaagatgt 19832519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 26647436 - 26647532
Alignment:
Q  105 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||| | ||||||||||||| ||||||| || ||||||| ||||||| |||||||    
T  26647436 gatgattttctttggcgtccttatgttagatatgctgataagtgtgaattgttttatccaaatgatgaaatttcggtaccatttaagaaagatttgg 26647532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 26652122 - 26652246
Alignment:
Q  77 tgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaact 176  Q
    ||||||||||||||| ||||| ||||   |||||||| |||||||||| |||||||  ||||| |||||||||| | ||||||||||||| || | ||||    
T  26652122 tgtgaggttggcattagattcagctatcaatgattttatttggcgtccttatgttcggtatgcagataagtgtgaagtgttttatccaaatgacggaact 26652221  T
Q  177 ttggtaccacttaagaaggatttgg 201  Q
    ||||||||| ||||||| |||||||    
T  26652222 ttggtaccatttaagaaagatttgg 26652246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 20033906 - 20033803
Alignment:
Q  249 tcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaag 348  Q
    ||||||||||| | | ||||||| || |||| ||||||  | || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20033906 tcatttgttatatgcatgagagtgtctgagcaagttggtatcgactctatagagcaatatcttccacatagagttgctatgcaatttggaatggatcaag 20033807  T
Q  349 atgt 352  Q
    ||||    
T  20033806 atgt 20033803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 20046555 - 20046654
Alignment:
Q  105 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    |||||||||||||||||||||||||||  |||| |||| ||||||||||| |||||||||||  | |||| || ||||||| ||||||||||||||||||    
T  20046555 gatgattttctttggcgtccatatgttagatatcctgacaagtgtggaattttttatccaaataacgaaatttgggtaccatttaagaaggatttggata 20046654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 19951558 - 19951652
Alignment:
Q  107 tgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||| || || |||| |||||| ||| ||||||| |||||||    
T  19951558 tgattttatttggcgtccatatgttagatatgctgataagtgtggaatgttttatccgaatgaagaaattttggtgccatttaagaaagatttgg 19951652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 19849407 - 19849497
Alignment:
Q  81 aggttggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatg 171  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||| |  ||||||| |||| | |||||||||||||||||| ||||    
T  19849407 aggttggcattagactcggctatggatgattttctttggcgtccatatgctagatatgctcataattatggaatgttttatccaaatgatg 19849497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 19858615 - 19858721
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    ||||||||| |||| |  ||||||||||| ||||||||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||||  | | ||||    
T  19858615 ctctcatttattatatgtttgagagtttctgagctagttgggtttgagtttatagagcaatatctaccacatagagttgctatgcaatttgaatttgatc 19858714  T
Q  346 aagatgt 352  Q
    |||||||    
T  19858715 aagatgt 19858721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 20046639 - 20046769
Alignment:
Q  222 aagaaggatttggataacaatgttctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagag 321  Q
    ||||||||||||||||| ||  | || ||||||  ||| | | |||||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||    
T  20046639 aagaaggatttggataaaaaaatactttcattttctatatgcctgagagtttctgagcttgttggatttgagtctatagagcagtatcttccacatagag 20046738  T
Q  322 ttgctatgcaatttagaatggatcaagatgt 352  Q
    || ||||||||||| || | || ||||||||    
T  20046739 tttctatgcaatttggacttgaccaagatgt 20046769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 19812717 - 19812798
Alignment:
Q  104 ggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacca 185  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||| | ||||||||||||| ||||||| || |||||||    
T  19812717 ggatgattttctttggcgtccatatgttagatatgccgataagtgtgcattgttttatccaaatgatgaaatttcggtacca 19812798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 352
Target Start/End: Original strand, 19854060 - 19854149
Alignment:
Q  263 cttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||||| ||||||||||| ||||| | ||| ||||||||||| |||||||||||||||| ||||||| || | |||||||||||    
T  19854060 cttgagagtttctgagctagttgggtttgagtttatagagcaatatctaccacatagagttgctaggcaatttggatttgatcaagatgt 19854149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 19849557 - 19849645
Alignment:
Q  264 ttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaagatgt 352  Q
    ||||||||||| |||||  |||||||||| ||||| ||||||||||| |||||||||||  || |||||||  ||||||||||||||||    
T  19849557 ttgagagtttctgagctcattggatttgagtctatagagcaatatctcccacatagagtctctttgcaattcggaatggatcaagatgt 19849645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 20015884 - 20015785
Alignment:
Q  105 gatgattttctttggcgtccatatgttca-atatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggat 203  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||   ||||||||||||| |||| |  ||| |||||| ||||||| |||||||||    
T  20015884 gatgattttctttggcgtccatat-ttcagatatgctgataagtgtgatttgttttatccaaatgatgcattttttgtaccatttaagaaagatttggat 20015786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 19853931 - 19854028
Alignment:
Q  104 ggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    |||||||||| |||||||||| ||||||   |||||| ||||||||||||||||||| || || ||||||| |  ||||||| ||||||| |||||||    
T  19853931 ggatgattttatttggcgtccttatgttagctatgctcataagtgtggaatgttttacccgaatgatgaaattcgggtaccatttaagaacgatttgg 19854028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 166
Target Start/End: Original strand, 19858436 - 19858565
Alignment:
Q  31 tgttgaggtggaatatggttaagcccttgaaagttgacagtgtgactgtgaggttggcattggattcggctaaggatgattttctttggcgtccatatgt 130  Q
    |||| |||||| ||| ||||||| ||||||||||||||| ||| |       ||||||||| || |||||||  ||||||||| |||||||||| || ||    
T  19858436 tgtttaggtggcataaggttaaggccttgaaagttgacaatgttaa------gttggcattagactcggctattgatgattttatttggcgtccttacgt 19858529  T
Q  131 tcaatatgctgataagtgtggaatgttttatccaaa 166  Q
    |  |||||| |||||||||||| |||||||||||||    
T  19858530 tagatatgcagataagtgtggactgttttatccaaa 19858565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 19989967 - 19990040
Alignment:
Q  109 attttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggta 182  Q
    |||||||||||||||||||||||  || |||||| ||||||| | ||||||||||||| |||| ||||| ||||    
T  19989967 attttctttggcgtccatatgttagatttgctgagaagtgtgaactgttttatccaaatgatggaacttgggta 19990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 350
Target Start/End: Original strand, 19990087 - 19990172
Alignment:
Q  265 tgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaagat 350  Q
    |||||||||| ||||| |||||| |||| | | | |  |||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  19990087 tgagagtttctgagcttgttggaattgactttgtagttcaatatctcccacatagagttgctttgcaatttggaatggatcaagat 19990172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 20033991 - 20033924
Alignment:
Q  134 atatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    |||||||||||||||| || |||||||||| || ||||||| ||  |||||| ||||||| |||||||    
T  20033991 atatgctgataagtgtagactgttttatccgaatgatgaaatttcagtaccatttaagaatgatttgg 20033924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 9815577 - 9815683
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | |||||||||||||||||| |||||||| || ||||| ||||| ||| | ||||||||||||||||||||||||  ||||||||    
T  9815577 ctctcatttgttatatgcttgagagtttccgagcttgttggattcgactctatagagcagtatttgccacatagagttgctatgcaatttgaaatggatc 9815676  T
Q  346 aagatgt 352  Q
    |||||||    
T  9815677 aagatgt 9815683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 26354502 - 26354396
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | | |||||||||| ||||| ||||||||||| ||||| ||||| ||| | |||||||||||||||||||||||| |||||||||    
T  26354502 ctctcatttgttatatgcctgagagtttctgagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatc 26354403  T
Q  346 aagatgt 352  Q
    |||||||    
T  26354402 aagatgt 26354396  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 38435147 - 38435058
Alignment:
Q  263 cttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaagatgt 352  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||    
T  38435147 cttgagagtttcctagctaattggatttgactctattgaacaatatctaccacatagagatgctatgtaatttagaattgatcaagatgt 38435058  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 9815449 - 9815568
Alignment:
Q  85 tggcattggattcggctaaggatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtacc 184  Q
    ||||||| || ||||||| ||||||||||||||||||||||||| ||  |||||||||||| || ||  ||||||||||||| ||||    |||||||||    
T  9815449 tggcattagactcggctatggatgattttctttggcgtccatattttagatatgctgataactgcggtgtgttttatccaaatgatgcgcttttggtacc 9815548  T
Q  185 acttaagaaggatttggata 204  Q
    | ||||||| ||||||||||    
T  9815549 atttaagaaagatttggata 9815568  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 26354609 - 26354511
Alignment:
Q  106 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    ||||||||||||||||||||||| ||  |||||| ||| | |||||  | ||||||||||| |||| || || ||||||| ||||||| ||||||||||    
T  26354609 atgattttctttggcgtccatattttagatatgcagatgaatgtggtgtattttatccaaatgatgcaatttcggtaccatttaagaaagatttggata 26354511  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 1717652 - 1717748
Alignment:
Q  105 gatgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||| | ||||||| |||||||||| ||||||| |||||||    
T  1717652 gatgattttatttggcgtccatatgttagatatgctgataagcgtggaatgttttatccatatgatgaaattttggtaccatttaagaaagatttgg 1717748  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 1717766 - 1717869
Alignment:
Q  249 tcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaag 348  Q
    ||||||||||| | ||||||||| || || || ||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  1717766 tcatttgttatatgcttgagagtatctgaacttgttggatttgactctatagagcagtatctgccacatagagttgctatgcaatttggaatggatcaag 1717865  T
Q  349 atgt 352  Q
    ||||    
T  1717866 atgt 1717869  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 38483409 - 38483507
Alignment:
Q  106 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgttttatccaaaggatgaaactttggtaccacttaagaaggatttggata 204  Q
    |||||||||||| |||||||||| ||  ||||| ||||||||||||  ||||||||| ||| |||| |  |||||||||  |||||||  |||||||||    
T  38483409 atgattttctttagcgtccatattttagatatgatgataagtgtggtttgttttatcaaaatgatgcacttttggtaccgtttaagaaatatttggata 38483507  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 38483516 - 38483620
Alignment:
Q  246 ctctcatttgttatgtccttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatc 345  Q
    |||||||||||||| | |||||||||||  ||||| ||| |||||||  |||| ||||| ||  ||   ||||||||||||||||||||| | ||||||     
T  38483516 ctctcatttgttatatgcttgagagtttttgagcttgttagatttgagactatagagcagta--tttgtcatagagttgctatgcaatttggtatggatt 38483613  T
Q  346 aagatgt 352  Q
    |||||||    
T  38483614 aagatgt 38483620  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 12495677 - 12495575
Alignment:
Q  106 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaa----tgttttatccaaaggatgaaactttggtaccacttaagaaggatttgg 201  Q
    |||||||||||||||||||||||| |  |||| |||| ||||||||||    | |||||||||||  |||||| || ||||||| |||||||||||||||    
T  12495677 atgattttctttggcgtccatatgctagatatcctgagaagtgtggaattttttttttatccaaataatgaaatttgggtaccatttaagaaggatttgg 12495578  T
Q  202 ata 204  Q
    |||    
T  12495577 ata 12495575  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 12519478 - 12519379
Alignment:
Q  106 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgtttt--atccaaaggatgaaactttggtaccacttaagaaggatttggat 203  Q
    ||||||||||||| |||||||||| |  |||| |||| ||||||||||| ||||  |||||||  |||||| || ||||||| |||||||||||||||||    
T  12519478 atgattttctttg-cgtccatatgctagatatcctgagaagtgtggaattttttttatccaaataatgaaatttgggtaccatttaagaaggatttggat 12519380  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 12579773 - 12579673
Alignment:
Q  106 atgattttctttggcgtccatatgttcaatatgctgataagtgtggaatgt--tttatccaaaggatgaaactttggtaccacttaagaaggatttggat 203  Q
    ||||||||||||| |||||||||| |  |||| || | ||||||||||| |  ||||||||||  |||||| || ||||||| |||||||||||||||||    
T  12579773 atgattttctttgacgtccatatgctagatatcctaagaagtgtggaatttcttttatccaaataatgaaatttgggtaccatttaagaaggatttggat 12579674  T
Q  204 a 204  Q
    |    
T  12579673 a 12579673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 352
Target Start/End: Original strand, 12581822 - 12581910
Alignment:
Q  264 ttgagagtttccgagctagttggatttgattctattgagcaatatcttccacatagagttgctatgcaatttagaatggatcaagatgt 352  Q
    |||||||||||  ||||  |||||||||| | ||| |||| || ||||| ||||| ||||  |||||||||| |||| |||||||||||    
T  12581822 ttgagagtttctaagcttattggatttgagtatatagagctatgtcttcgacatacagtttttatgcaatttggaattgatcaagatgt 12581910  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 6397418 - 6397323
Alignment:
Q  109 attttctttggcgtccatatgttcaatatgctgataagtgtggaat--gttttatccaaaggatgaaactttggtaccacttaagaaggatttgga 202  Q
    |||||||||||||||||||||||  |||| |||| |||||||||||   |||||||||||  | ||||  ||||||||| ||||||||||||||||    
T  6397418 attttctttggcgtccatatgttagatatcctgagaagtgtggaattctttttatccaaataacgaaatcttggtaccatttaagaaggatttgga 6397323  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 6397324 - 6397284
Alignment:
Q  276 gagctagttggatttgattctattgagcaatatcttccaca 316  Q
    ||||| ||||||||||| ||||| |||||||||||||||||    
T  6397324 gagcttgttggatttgagtctatagagcaatatcttccaca 6397284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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