View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_24 (Length: 347)
Name: NF19618_low_24
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 45566824 - 45566501
Alignment:
| Q |
9 |
acatcatcatgaatccaatcacaaccagccaactctaccgctttcacctaggcaagcttcctactgggggaatgttgtggtcctattttgggcatcaatt |
108 |
Q |
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| T |
45566824 |
acatcatcatgaatccaatcacaaccagccaactctactgctttcacctaggcaagcttcctactgggggaatgttgtggtcctattttgggcatcaatt |
45566725 |
T |
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| Q |
109 |
gtatcatttgtatgtcttttgtttaaaatcttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccttttattaga |
208 |
Q |
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| T |
45566724 |
gtatcatttgtatgtcttttgtttaaaatgttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccatttattaga |
45566625 |
T |
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| Q |
209 |
gtgaattttcggtcaatatgctagttgat-nnnnnnnttaattatgtaatcatgtttgattcttttttactacagtaattgtgttcgattgatggcattg |
307 |
Q |
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| T |
45566624 |
gtgaattttcggtcaatatgctagttgataaaaaaaattaattatgtaatcatgtttgattcttttttactacagtaattgtgtttgattgatggcattg |
45566525 |
T |
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| Q |
308 |
taagagttgtgtagaagttaagta |
331 |
Q |
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| T |
45566524 |
taagagttgtgtagaagttaagta |
45566501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 35817741 - 35817961
Alignment:
| Q |
9 |
acatcatcatgaatccaatcacaaccagccaactctaccgctttcacctaggcaagcttcctactgg-gggaatgttgtggtcctattttgggcatcaat |
107 |
Q |
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| T |
35817741 |
acatcaccatgaatccaatcacaaccagccaactttactgcttt-acccaggcaagcttcctccttatgggaatgttgaggtcctattttgggtatcaat |
35817839 |
T |
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| Q |
108 |
tgtatcatttgtatgtcttttgtttaaaatcttatagataattgaattttagtcccgtgataggcgctagcatctcaacctcagattccccttttattag |
207 |
Q |
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| T |
35817840 |
tgtatcatttgtacgtgttctgtttaaaatctaatagatgattgaattttaatctcgtgataggcgctagcatttcaacctcaggttccccatttattag |
35817939 |
T |
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| Q |
208 |
agtgaattttcggtcaatatgc |
229 |
Q |
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||| ||||||||||||||||| |
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| T |
35817940 |
ggtgcattttcggtcaatatgc |
35817961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 45084410 - 45084355
Alignment:
| Q |
9 |
acatcatcatgaatccaatcacaaccagccaactctaccgctttcacctaggcaag |
64 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
45084410 |
acatcaacatgaatccaatcacaaccagccaactctactgcttttacctagccaag |
45084355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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