View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_26 (Length: 339)
Name: NF19618_low_26
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 24868903 - 24868580
Alignment:
| Q |
7 |
atatcataatcagttttatacctcaaaaatcaattctaagagctctagaacttgaaccaaatatacactttgccttattttccttaaaaagaaaaagttg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
24868903 |
atatcataatcagttttatacctcaaaaatcaattctaagagctctaaaagttgaaccaaacatacactttgccttattttcctttaaaagaaaaagttg |
24868804 |
T |
|
| Q |
107 |
aacccatactaaagtagtaacccatgcactannnnnnnnnnnncgaaagaactcatgcactttagtgtgttttctgtatcactctaacaagaaaaagtat |
206 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24868803 |
aacccatactaaagtagtaagccatgcactatttttattttttcgaaagaactcatgcactttagtgtgttttctgtatcactctaacaagaaaaagtat |
24868704 |
T |
|
| Q |
207 |
tactcccatattgaagatga-------aacttggaagtgtcaaggctagcttaattaattcctagtttactctacaccagatgaatgattcctaccagtt |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24868703 |
tactcccatattgaagatgaaacttggaacttggaagtgtcaatgctagcttaattaattcctagtttactctacaccagatgaatgattcctaccagtt |
24868604 |
T |
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| Q |
300 |
tgtttcatccaaatctcattaagc |
323 |
Q |
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|||||||||||||||||||||||| |
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| T |
24868603 |
tgtttcatccaaatctcattaagc |
24868580 |
T |
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