View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_27 (Length: 336)
Name: NF19618_low_27
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 4928159 - 4928076
Alignment:
| Q |
17 |
cttttatcttgggtagatattatttaagtctgcaatgaaaacattataattgaagttttgtatttgttttgaaactatgtatgt |
100 |
Q |
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| T |
4928159 |
cttttatcttgggtagatattatttaagtctgcaatgaaaacattataattgaagttttatatttgttttgaaactatgtatgt |
4928076 |
T |
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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 335
Target Start/End: Complemental strand, 3808335 - 3808129
Alignment:
| Q |
147 |
taatgactccaatttaaggcacaaattgttttctatgtccttcagttctaagttaaccttttcatgttactt--------------------gtgttatg |
226 |
Q |
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| T |
3808335 |
taatgactccaatttaaggcacaaattgttttctatgccctgcagttctaagttaaccttt-catgttactttgctagttcaaatttcatttgtgttatg |
3808237 |
T |
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| Q |
227 |
ttcttaatgtgcttgatttcaagtcttttctttgttattttcataatttagaccgagaagattgtgaatttaaggaagcaagataaataaacacttgatc |
326 |
Q |
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| T |
3808236 |
ttctgaatgtgcttggttacaagtcttttcttt-ttatttttacaatttagattgagaagaatgtgaatttacggaagtaagattaaaaaacacttgatc |
3808138 |
T |
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| Q |
327 |
ctttccatc |
335 |
Q |
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| T |
3808137 |
ctctccatc |
3808129 |
T |
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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 28754336 - 28754227
Alignment:
| Q |
227 |
ttcttaatgtgcttgatttcaagtcttttctttgttattttcataatttagaccgagaagattgtgaatttaaggaagcaagataaataaacacttgatc |
326 |
Q |
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| T |
28754336 |
ttctgaatgtgcttggttacgcgtcttttcttttttatttttacaatttagactgagaagattgtgaatttaaggaagtaagattaaaaaacacttgatc |
28754237 |
T |
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| Q |
327 |
ctttccatcc |
336 |
Q |
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| T |
28754236 |
ctatccatcc |
28754227 |
T |
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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 41531987 - 41531926
Alignment:
| Q |
37 |
tatttaagtctgcaatgaaaacattataattgaagttttgtatttgttttgaaactatgtat |
98 |
Q |
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| T |
41531987 |
tatttaagtctgcaatgaaaatgttataattgaagttttgtgtttgttttgaaactctgtat |
41531926 |
T |
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