View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_29 (Length: 319)
Name: NF19618_low_29
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 2850321 - 2850621
Alignment:
| Q |
7 |
ggaggaaggggagacaatcgccgagggagatcgagaggatacattctcttagagtgtgtttgagttggagattgtaaaaaggtaaaatacttttgaggga |
106 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2850321 |
ggaggaaggggagacaatcgcctagggagattgagaggatacattctcttagagtgtgtttgagttggagattgtaaaaaggtaaaatacttttgaggga |
2850420 |
T |
|
| Q |
107 |
tttaaaatgatttgtcttagttgtagcactatttcttcaaacactatcaagttgtatgttgcagcattgctatattgaacactgttctggaaatttcaac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2850421 |
tttaaaatgatttgtcttagttgtagcactatttcttcaaacactatcaagttgtatgttgtagcattgctatattgaacactgttctggaaatttcaac |
2850520 |
T |
|
| Q |
207 |
atgttctataatttctttttgaatttttgttggttgattctgtttgtgcagagatcaaagccttgaagctttattaactacttagtgaaggtcattgatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2850521 |
atgttctataatttctttttgaatttttgttggttgattctgtttgtgctgagatcaaagccttgaagctttattaactacttagtgaatgtcattgatg |
2850620 |
T |
|
| Q |
307 |
a |
307 |
Q |
| |
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| |
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| T |
2850621 |
a |
2850621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 2902353 - 2902653
Alignment:
| Q |
7 |
ggaggaaggggagacaatcgccgagggagatcgagaggatacattctcttagagtgtgtttgagttggagattgtaaaaaggtaaaatacttttgaggga |
106 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2902353 |
ggaggaaggggagacaatcgccaagggagatcgagaggatacattctcttagagtgtgtttgagttggagattgtaaaaaggtaaaatacttttgaggga |
2902452 |
T |
|
| Q |
107 |
tttaaaatgatttgtcttagttgtagcactatttcttcaaacactatcaagttgtatgttgcagcattgctatattgaacactgttctggaaatttcaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2902453 |
tttaaaatgatttgtcttagttgtagcactatttcttcaaacactatcaagtggtatgttgtagcattgctatattgaacactgttctggaaatttcaac |
2902552 |
T |
|
| Q |
207 |
atgttctataatttctttttgaatttttgttggttgattctgtttgtgcagagatcaaagccttgaagctttattaactacttagtgaaggtcattgatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2902553 |
atgttctataatttctttttgaatttttgttggttgattctgtttgtgctgagatcaaagccttgaagctttattaactacttagtgaaagtcattgatg |
2902652 |
T |
|
| Q |
307 |
a |
307 |
Q |
| |
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| |
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| T |
2902653 |
a |
2902653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 42948472 - 42948773
Alignment:
| Q |
7 |
ggaggaaggggagacaatcgccgagggagatcgagaggatacattctcttagagtgtgtttg-agttggagattgtaaaaaggtaaaatactttt--gag |
103 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| | | || |||| ||| | ||||||||| |||| ||| |
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| T |
42948472 |
ggaggaaggggagacaatttctgagggagatcgagaggatacattct--tagagtgtgtttggaataggggatt-taacatggtaaaataattttttgag |
42948568 |
T |
|
| Q |
104 |
ggatttaaaatgatttgtcttagttgtagcactatttcttcaaacactatcaagttgtatgttgcagcattgctatattgaacactgttctggaaatttc |
203 |
Q |
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||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||| | |||||| || ||||||| ||||||| ||| || |
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| T |
42948569 |
ggaattaaaatgatttgtcttagctgtagcactgtttcttcaaacactatcaaattgtaagttgtatcattgcaatgttgaacaatgttctgaaaacttt |
42948668 |
T |
|
| Q |
204 |
aaca-tgttctataatttctttttgaatttttgttggttgattctgtttgtgcagagatcaaagccttgaagctttattaactacttagtgaaggtcatt |
302 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42948669 |
aactgtgttctataatttctttttgaatttgtgttggttgattgtgtctgtgcagagatcaaagccttgaagctttattaactacttagagaaggtcatt |
42948768 |
T |
|
| Q |
303 |
gatga |
307 |
Q |
| |
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||||| |
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| T |
42948769 |
gatga |
42948773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 44774964 - 44774914
Alignment:
| Q |
7 |
ggaggaaggggagacaatcgccgagggagatcgagaggatacattctctta |
57 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44774964 |
ggaggaaggggagacaattaccgagggagatcgagaggatacattctctta |
44774914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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