View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_low_32 (Length: 295)

Name: NF19618_low_32
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_low_32
NF19618_low_32
[»] chr1 (8 HSPs)
chr1 (43-286)||(7101275-7101525)
chr1 (41-229)||(24241474-24241661)
chr1 (43-228)||(16253026-16253211)
chr1 (115-229)||(21356790-21356901)
chr1 (44-229)||(34773347-34773532)
chr1 (115-231)||(39744169-39744282)
chr1 (42-216)||(41942790-41942962)
chr1 (124-229)||(2344965-2345068)
[»] chr5 (11 HSPs)
chr5 (42-229)||(10719742-10719929)
chr5 (44-229)||(2976378-2976555)
chr5 (42-230)||(20524529-20524716)
chr5 (120-229)||(8026463-8026574)
chr5 (115-229)||(33758790-33758901)
chr5 (66-230)||(34849437-34849600)
chr5 (121-206)||(23151436-23151518)
chr5 (124-215)||(30319817-30319906)
chr5 (43-205)||(37872128-37872291)
chr5 (145-232)||(36442077-36442160)
chr5 (44-85)||(20654461-20654502)
[»] chr2 (11 HSPs)
chr2 (41-216)||(30706075-30706250)
chr2 (44-229)||(3870020-3870208)
chr2 (115-229)||(11028775-11028887)
chr2 (115-230)||(6512079-6512196)
chr2 (44-177)||(4848117-4848248)
chr2 (44-230)||(37721444-37721629)
chr2 (44-229)||(38879513-38879697)
chr2 (129-225)||(36400857-36400952)
chr2 (136-229)||(29685491-29685582)
chr2 (115-229)||(28734070-28734181)
chr2 (44-92)||(34480055-34480103)
[»] chr7 (9 HSPs)
chr7 (42-214)||(46023139-46023311)
chr7 (44-226)||(30783412-30783589)
chr7 (43-229)||(34998524-34998710)
chr7 (44-230)||(8541426-8541609)
chr7 (136-228)||(39187980-39188068)
chr7 (44-228)||(45627340-45627527)
chr7 (43-98)||(32677070-32677125)
chr7 (66-161)||(15878700-15878796)
chr7 (115-229)||(10544987-10545100)
[»] chr3 (10 HSPs)
chr3 (46-228)||(47169243-47169429)
chr3 (115-225)||(1994850-1994957)
chr3 (42-161)||(39170903-39171021)
chr3 (115-230)||(22220205-22220318)
chr3 (44-230)||(45805455-45805645)
chr3 (42-103)||(25199064-25199125)
chr3 (115-229)||(2008395-2008508)
chr3 (115-208)||(39056875-39056964)
chr3 (115-173)||(28297723-28297782)
chr3 (67-103)||(14785046-14785082)
[»] chr4 (9 HSPs)
chr4 (44-226)||(17056614-17056793)
chr4 (46-230)||(20679770-20679956)
chr4 (115-217)||(47833503-47833603)
chr4 (43-226)||(39503431-39503616)
chr4 (41-225)||(46550629-46550813)
chr4 (44-181)||(47541737-47541876)
chr4 (115-208)||(36364868-36364954)
chr4 (44-96)||(36364605-36364657)
chr4 (43-96)||(15827051-15827104)
[»] scaffold1339 (1 HSPs)
scaffold1339 (115-230)||(57-170)
[»] chr8 (10 HSPs)
chr8 (44-234)||(36132667-36132854)
chr8 (44-229)||(30208195-30208379)
chr8 (44-230)||(40719821-40720010)
chr8 (45-213)||(31333091-31333258)
chr8 (115-225)||(42056680-42056787)
chr8 (44-181)||(1162045-1162183)
chr8 (125-229)||(35179156-35179258)
chr8 (40-98)||(16782307-16782365)
chr8 (127-225)||(39402038-39402136)
chr8 (167-224)||(6048653-6048710)
[»] chr6 (4 HSPs)
chr6 (115-229)||(7080149-7080262)
chr6 (47-94)||(2141175-2141222)
chr6 (42-96)||(994876-994930)
chr6 (175-216)||(994874-994915)
[»] scaffold0830 (1 HSPs)
scaffold0830 (115-200)||(5379-5462)
[»] scaffold0009 (2 HSPs)
scaffold0009 (44-106)||(25955-26017)
scaffold0009 (136-229)||(25684-25773)
[»] scaffold0288 (1 HSPs)
scaffold0288 (41-96)||(17974-18030)
[»] scaffold0095 (1 HSPs)
scaffold0095 (127-225)||(35366-35464)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 43 - 286
Target Start/End: Original strand, 7101275 - 7101525
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata--aagaaatannnnnnnnaa-----tagtaaagaggaaattgat 135  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||  ||||||||         |     |  ||||||||||||||||    
T  7101275 agagaaattctaacatggttacgtgatcaaataaaaagtgtttggtcacacacatataaagaaatatttttaaggaccatcttttaaagaggaaattgat 7101374  T
Q  136 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||| ||| ||||||||||||||||||    
T  7101375 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgggagaatacctcaaaaat 7101474  T
Q  236 tactttcttaactttgtttcaaacaatttttctgttatttaatagtattat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101475 tactttcttaactttgtttcaaacaatttttctgttatttaatagtattat 7101525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 24241661 - 24241474
Alignment:
Q  41 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaa 138  Q
    ||||||||||||||||||||| |   ||||||| ||||||| ||||||||||||||  |||| || ||        |||| ||| |||||||||||||||    
T  24241661 taagagaaattctaatatggtcacaggaccaaagaaaaagtatttggtcacacacacataaaaaagtattttttttaataataaggaggaaattgataaa 24241562  T
Q  139 aga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
    | | ||||||||||||||| ||||  ||||||||||||||||||    ||||||| ||||||||||||| | ||||||| | ||||||||||    
T  24241561 aaagatgattgaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtcatgtgaccatggaagaatacctc 24241474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 228
Target Start/End: Complemental strand, 16253211 - 16253026
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca--cacataaagaaata-nnnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    ||||||||||||||||| | |  ||| |||| ||||||||||||||||||  |||||||| ||| |         |||| ||| ||||||||||||||||    
T  16253211 agagaaattctaatatgatcacatgatcaaagaaaaagtgtttggtcacacacacataaaaaaaaatatttttttaataataaggaggaaattgataaaa 16253112  T
Q  140 ga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 228  Q
     | ||||||||||||||| ||||  |||||||||||||||| |    ||||||| ||||||||||||||| ||| ||| | |||||||||    
T  16253111 aagatgattgaatattttgaggagaatctttttatgtgtgtct----ccaaacattattgatttggtcttgtgaacatggaagaatacct 16253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 21356901 - 21356790
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||| | ||  |||||||||| |||||||    ||||||| ||||||||||||||| ||||    
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgt----ccaaacattattgatttggtcttgtgac 21356806  T
Q  214 cataggagaatacctc 229  Q
    ||||  ||||||||||    
T  21356805 cataaaagaatacctc 21356790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 34773347 - 34773532
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca--cataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    ||||||||||||||||||||   ||||||| |||||||||||| |||||||  || |||||| |         |||| |||| |||||||| |||||| |    
T  34773347 gagaaattctaatatggttacaggaccaaagaaaaagtgtttgatcacacatacaaaaagaagtgttttttttaataataaa-aggaaattaataaaaaa 34773445  T
Q  142 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
     ||||||||||||||| ||||  |||||||||  ||||||||||  |||||| |||||| |||||||| ||| ||| | ||||||||||    
T  34773446 tatgattgaatattttgaggagaatcttttta--tgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaatacctc 34773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 39744169 - 39744282
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| ||| ||||||| |||||||| || ||||||| |||| | || |  |||||||||| |||||||    ||||||| ||||||||||||||| ||||    
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgt----ccaaacattattgatttggtcttgtgac 39744264  T
Q  214 cataggagaatacctcaa 231  Q
    ||||| ||||||||||||    
T  39744265 catagaagaatacctcaa 39744282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 41942962 - 41942790
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtca--cacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    |||||||||||||||||||| |   ||||||| | ||||||||||||||  ||||||||||||| ||        |||| ||| ||||||||||||||||    
T  41942962 aagagaaattctaatatggtcacacgaccaaagataaagtgtttggtcatacacacataaagaagtattttttt-aataataaggaggaaattgataaaa 41942864  T
Q  140 ga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccat 216  Q
       ||||||||||||||  | ||  |||||||||||| |||||    ||||||| ||||||||||||||| |||||||    
T  41942863 atgatgattgaatatttcgaagagaatctttttatgtatgtgt----ccaaacattattgatttggtcttgtgaccat 41942790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 2345068 - 2344965
Alignment:
Q  124 gaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggaga 222  Q
    |||||||||||||||| | |||||||||| |||||| ||  || ||||||||||||  |||  ||||||| ||||||||||||||| ||||||  | |||    
T  2345068 gaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttat--ccaaacattattgatttggtcttgtgaccaaggaaga 2344972  T
Q  223 atacctc 229  Q
    |||||||    
T  2344971 atacctc 2344965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 229
Target Start/End: Complemental strand, 10719929 - 10719742
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca--cacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    |||||||||| || |||||| |  |||||||||||||||||||||||||||  ||||||||||||||        |||||||||||| ||||||||||||    
T  10719929 aagagaaattttattatggtcacatgaccaaataaaaagtgtttggtcacaaacacataaagaaatattttttttaatagtaaagagaaaattgataaaa 10719830  T
Q  140 gaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
     ||  ||||||||||||||||||||||| |||||||||||||||    |||||||||||| |||||||||||||||||| | ||||||||||    
T  10719829 aaaaatgattgaatattttaaggaccatttttttatgtgtgtgt----ccaaacactattaatttggtcttatgaccatggaagaatacctc 10719742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 2976378 - 2976555
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa- 142  Q
    |||||||||||||||||| |  |||| |||||||  ||||||||||||||||||||| || |         |||| |||||| ||||||||||||| ||     
T  2976378 gagaaattctaatatggtcacatgactaaataaa--gtgtttggtcacacacataaataatt-ttttttttaatattaaagaagaaattgataaaaaaaa 2976474  T
Q  143 tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| | ||||||||||    
T  2976475 tgattgaatattttaaggaccatctttttatgtgtgt------ccaaacactattgatttggtcttatgaccatggaagaatacctc 2976555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 230
Target Start/End: Original strand, 20524529 - 20524716
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    |||||||||||||||||| | |  ||| |||||||||||||||||||||||||||  ||||||||||        |||| ||||||||||||||||||||    
T  20524529 aagagaaattctaatatgatcacatgatcaaataaaaagtgtttggtcacacacacataaagaaatattttttttaataataaagaggaaattgataaaa 20524628  T
Q  140 gaa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
     || ||||||||||||||||  | |||||||| ||||||||||    ||||||| ||||||||| || || ||| ||| | |||||||||||    
T  20524629 aaaatgattgaatattttaaacatcatcttttgatgtgtgtgt----ccaaacagtattgatttagttttgtgatcatggaagaatacctca 20524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 8026574 - 8026463
Alignment:
Q  120 taaagaggaaattgata----aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacca 215  Q
    |||||||||||||||||    ||| |||||||||||||||||| |||||||||||||||||| ||   | ||||||| ||||||||||||||| |||| |    
T  8026574 taaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatg--cgtccaaacagtattgatttggtcttgtgacta 8026477  T
Q  216 taggagaatacctc 229  Q
    ||| ||||||||||    
T  8026476 tagaagaatacctc 8026463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 33758901 - 33758790
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| |||| ||||||||||||||| | ||||||||||| ||| ||||  ||||||||||||||||||    ||||||| |||||||||| |||| ||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgt----ccaaacagtattgatttgatcttgtgac 33758806  T
Q  214 cataggagaatacctc 229  Q
    ||| | ||||||||||    
T  33758805 catggaagaatacctc 33758790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 34849600 - 34849437
Alignment:
Q  66 tgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnn-aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggac 162  Q
    |||||||| ||||||||||||||||||||| |||| || ||         |||| ||| ||| |||||||||||| ||  |||||||||||||| ||||     
T  34849600 tgaccaaagaaaaagtgtttggtcacacacgtaaaaaagtatttttttttaataataaggagaaaattgataaaaaaagatgattgaatattttgaggag 34849501  T
Q  163 catctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
     |||||||||| |||||||    | ||||| ||||||||| ||||||||||||||  | |||||||||    
T  34849500 aatctttttatatgtgtgt----cgaaacattattgatttcgtcttatgaccataaaaaaatacctca 34849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  121 aaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtc 206  Q
    ||||| |||||||||||||   ||||||||||||||| ||||  ||||||||||||||||||    ||||||| |||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 30319906 - 30319817
Alignment:
Q  124 gaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacca 215  Q
    |||||||||||||||| | ||||||||||||||||| ||  || |||||||||| | ||||  ||||||| ||||||||||||||| ||||||    
T  30319906 gaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtat--ccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 37872128 - 37872291
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 140  Q
    ||||||||||||||||| | |   ||||||| ||||||| ||||||||||||||  |||| |||||        |||| ||| ||||||||||||||||     
T  37872128 agagaaattctaatatgatcagaggaccaaagaaaaagtatttggtcacacacacataaaaaaatatattttt-aataataaggaggaaattgataaaaa 37872226  T
Q  141 aa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggt 205  Q
    ||  |||||||||||||| | ||  |||||||||||||||||  || ||||| | ||||||||||||    
T  37872227 aagatgattgaatattttgatgagaatctttttatgtgtgtg--tgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 36442160 - 36442077
Alignment:
Q  145 attgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaa 232  Q
    |||||||||||||| ||||||||||||    | || |||| |||| |||||||||||||||||| ||| ||| | ||||| |||||||    
T  36442160 attgaatattttaaagaccatcttttt----gcgtttatgtccaatcactattgatttggtcttgtgagcatggaagaatccctcaaa 36442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 20654461 - 20654502
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgttt 85  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  20654461 gagaaattctaatatggtcacatgaccaaataaaaagtgttt 20654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 30706075 - 30706250
Alignment:
Q  41 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 140  Q
    ||||||||||| ||||||||| |  ||| ||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||     
T  30706075 taagagaaattttaatatggtcacatgatcaaataaaaagtgtttggtcacacacacaaagaaatattttttttaatagtaaagaggaaattgataaaaa 30706174  T
Q  141 aa------tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccat 216  Q
    ||      |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||    
T  30706175 aaaaaaaatgattgaatattttaaggaccatctttttatgtgtgt------ccaaacactattgatttggtcttgtgaccat 30706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 3870208 - 3870020
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnn--aatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||| |   ||||||| ||||||||||||||||||||||||||||| ||          |||| ||| |||||||||||||||| |    
T  3870208 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacataaagaagtattttttttttaataataaggaggaaattgataaaaaa 3870109  T
Q  142 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
     ||||||||||||||| ||||  |||||||||||| ||||| || | ||||| ||||||||||||||| ||||||| | ||||||||||    
T  3870108 gatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgaccatggaagaatacctc 3870020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 11028887 - 11028775
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatga 212  Q
    |||| ||| |||||||||||||||| ||  |||||||||||||||||||  ||||||||||||||||||    ||||||| ||||||||||||||| |||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgt----ccaaacattattgatttggtcttttga 11028792  T
Q  213 ccataggagaatacctc 229  Q
    | || | ||||||||||    
T  11028791 cgatggaagaatacctc 11028775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 6512079 - 6512196
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaa----tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttat 210  Q
    |||| |||||||||||||||||||| ||    |||||||||||||||  |  ||||||||||||||||||| |  ||||||||||||||||||||||| |    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttcatctttttatgtgtgtgtgt--ccaaacactattgatttggtcttgt 6512176  T
Q  211 gaccataggagaatacctca 230  Q
    |||||| | | |||||||||    
T  6512177 gaccatggaataatacctca 6512196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 4848117 - 4848248
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaat 143  Q
    |||||||||||||||| | |  ||| ||||||||||||| |||||| |||||||||| |||||        |||| |||| ||||||| ||||||| |||    
T  4848117 gagaaattctaatatgatcacatgatcaaataaaaagtggttggtcccacacataaaaaaatatttttt--aataataaaaaggaaatggataaaaaaat 4848214  T
Q  144 gattgaatattttaaggaccatctttttatgtgt 177  Q
    ||||||||||||||| || |||||||| ||||||    
T  4848215 gattgaatattttaatgatcatcttttcatgtgt 4848248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 37721629 - 37721444
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||| | | ||| ||| ||||||||||||||||||||||  ||||||| ||        |||| ||| |||||||||||||||| |    
T  37721629 gagaaattctaatatggtcacgagactaaagaaaaagtgtttggtcacacacacataaagaattattttttt-aataataaggaggaaattgataaaaaa 37721531  T
Q  142 a--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
    |  |||||||||||||| | ||  ||||||||||| | ||||    ||||| | ||||||||||||||| ||||||| | |||||||||||    
T  37721530 aaatgattgaatattttgaagagaatctttttatgcgcgtgt----ccaaatattattgatttggtcttgtgaccatggaagaatacctca 37721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 38879697 - 38879513
Alignment:
Q  44 gagaaattctaatatggtta--tgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||| |  | |||||||| ||||| |||||||||| |||||||||||| ||        |||| | | ||| |||||||||||| |    
T  38879697 gagaaattctaatatggtcacatatgaccaaagaaaaaatgtttggtcatacacataaagaagtattttttt-aataatgaggagaaaattgataaaaaa 38879599  T
Q  142 a--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
    |  ||||| |||||||| ||||  ||||||||||||||||||    ||||||| |||| |||||||||| |||| || | ||||||||||    
T  38879598 agatgatttaatattttgaggagaatctttttatgtgtgtgt----ccaaacattattaatttggtcttgtgactatggaagaatacctc 38879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  129 aattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaata 225  Q
    ||||||||||| | ||||||||||||||| ||||  |||||||||||||||||  ||  |||||| |||||||||||||||  |||||| | ||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtg--tgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 29685491 - 29685582
Alignment:
Q  136 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
    |||| ||| |||||||||||| ||||  || |||||||||||||||  ||||||||||| ||  ||||||| | ||||||| | ||||||||||    
T  29685491 aaaaaaattattgaatattttgaggagaatttttttatgtgtgtgt--gaccaaacactttttctttggtcatgtgaccatggaagaatacctc 29685582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 28734070 - 28734181
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatga 212  Q
    |||| |||||| ||||||||||||| ||  ||| ||| |||||| ||||  || |||||||||||||||    ||||||| ||||||||||||||| |||    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgt----ccaaacattattgatttggtcttgtga 28734164  T
Q  213 ccataggagaatacctc 229  Q
    || | | ||||||||||    
T  28734165 ccgtggaagaatacctc 28734181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 34480055 - 34480103
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca 92  Q
    |||||||||||||||||| |   ||||||| ||||||||||||||||||    
T  34480055 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcaca 34480103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 46023311 - 46023139
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacac--ataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    |||||||||||||||||||| |  |||||||||||||| |||||||||| ||||  |||||||||||        ||||||||| || ||||||||||||    
T  46023311 aagagaaattctaatatggtcagatgaccaaataaaaaatgtttggtcatacacgcataaagaaatatttattttaatagtaaaaagaaaattgataaaa 46023212  T
Q  140 gaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 214  Q
     ||||||||||||||||||  ||||||||||||||||||||  || ||||||| ||||||||||||||| |||||    
T  46023211 aaatgattgaatattttaaaaaccatctttttatgtgtgtg--tgtccaaacaatattgatttggtcttgtgacc 46023139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 30783412 - 30783589
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||||||||  ||||||||||        ||||  ||||||||||||||||||| |    
T  30783412 gagaaattctaaaatggtcacatgaccaaataaaaagtgtttggtcacacacacataaagaaatattttttt-aataagaaagaggaaattgataaaaaa 30783510  T
Q  142 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 226  Q
    || ||| ||||||||||| |||||||||||||||||||      |||||||||||| |||| ||||| ||||||||| |||||||    
T  30783511 ataattaaatattttaagaaccatctttttatgtgtgt------ccaaacactattaatttagtcttctgaccatagaagaatac 30783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 34998710 - 34998524
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 140  Q
    ||||||||||||||||||| |  ||| |||| ||||||| ||||||||||||||  ||||||||||        |||| ||| ||| ||||||||||||     
T  34998710 agagaaattctaatatggtcacatgatcaaagaaaaagtatttggtcacacacacataaagaaatattttttt-aataataaggagaaaattgataaaaa 34998612  T
Q  141 -aatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
     |||||||||||||||| ||||  |||||||||| ||||||| |  ||||||| ||||||||||||||| ||||||| | ||||||||||    
T  34998611 taatgattgaatattttgaggagaatctttttatatgtgtgtgt--ccaaacattattgatttggtcttgtgaccatggaagaatacctc 34998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 8541609 - 8541426
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgat--aaaaga 141  Q
    |||||||| ||||||||||||  || |||| ||| ||||||||||||||||||||||||| ||        |||| ||| ||||||||||||  |||| |    
T  8541609 gagaaattttaatatggttataggatcaaagaaatagtgtttggtcacacacataaagaagta-tttttttaataataaggaggaaattgataaaaaata 8541511  T
Q  142 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
    ||||||||||||||| ||||  ||||||||| ||||||||     |||||| ||||||||||||||| ||||||||  |||||| ||||    
T  8541510 atgattgaatattttgaggagaatctttttacgtgtgtgt----tcaaacattattgatttggtcttgtgaccataaaagaatatctca 8541426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 39187980 - 39188068
Alignment:
Q  136 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 228  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||| ||||||| | |||||||||    
T  39187980 aaaaaaatgattgaatattttaaggaccatctttttatgcgtgtgt----ccaaatactattgatttggtcttctgaccatggaagaatacct 39188068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 228
Target Start/End: Original strand, 45627340 - 45627527
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnn-aatagtaaagaggaaattgataaaag 140  Q
    |||||||||||| ||||| |  |||||||||||||| ||||||||||||||||  ||||||||||         |||| || | |||||||||||||||     
T  45627340 gagaaattctaaaatggtcacatgaccaaataaaaactgtttggtcacacacacataaagaaatatttttttttaataatataaaggaaattgataaaaa 45627439  T
Q  141 aa-tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 228  Q
    || ||||| |||||||||||||| || ||||| | ||||||| || | ||||||||||||||||||| | ||||||| | |||||||||    
T  45627440 aaatgattaaatattttaaggacaattttttt-tatgtgtgtgtgtcaaaacactattgatttggtcctgtgaccatggaagaatacct 45627527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 32677125 - 32677070
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata 98  Q
    ||||||||||||||||||| |  ||| |||||||||| ||||||||||||||||||    
T  32677125 agagaaattctaatatggtcacatgatcaaataaaaaatgtttggtcacacacata 32677070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 15878700 - 15878796
Alignment:
Q  66 tgaccaaataaaaagtgtttggtcacacac--ataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaatgattgaatattttaagga 161  Q
    ||||||||||||||||||||||||||||||  || ||||||||        |||| ||||||  |||||||||||| ||| |||||||||||||||||    
T  15878700 tgaccaaataaaaagtgtttggtcacacacaaatcaagaaata-tttttttaataataaagactaaattgataaaacaataattgaatattttaagga 15878796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 10545100 - 10544987
Alignment:
Q  115 aatagtaaagaggaaattgataaa---agaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatg 211  Q
    |||| |||||||||||||||||||   | ||||||||||||||||||  |  |||||||||||||||| |    ||||| |||||||||| |||||| ||    
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtct----ccaaatactattgattcggtcttgtg 10545005  T
Q  212 accataggagaatacctc 229  Q
    | | | | ||||||||||    
T  10545004 atcgtggaagaatacctc 10544987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 47169429 - 47169243
Alignment:
Q  46 gaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa--- 142  Q
    |||||| |||||||||  | |||||||||||||||||||| ||||||||||||||||||||        |||| |||||||||||||||||||| ||       
T  47169429 gaaattttaatatggtcgtatgaccaaataaaaagtgtttagtcacacacataaagaaataatttttt-aataataaagaggaaattgataaaaaaaaaa 47169331  T
Q  143 ----tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacct 228  Q
        ||||||||||||||| ||||| ||||||||||||||||| |  |||||||||||||||||||||||||||| |||  |||||||||    
T  47169330 aaaatgattgaatattttatggaccctctttttatgtgtgtgtgt--ccaaacactattgatttggtcttatgactataaaagaatacct 47169243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 1994850 - 1994957
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| |||||||| ||||||||||| | ||||||||||||||| ||||  |||||||| ||||| |||    ||||||| ||||||||||||||| ||||    
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgt----ccaaacattattgatttggtcttgtgac 1994945  T
Q  214 cataggagaata 225  Q
    ||||| ||||||    
T  1994946 catagtagaata 1994957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 39170903 - 39171021
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||||| |   || |||||||| | ||||||||||||||||||||||||||        |||| |||| || |||||||||||| |    
T  39170903 aagagaaattctaatatggtcacaagatcaaataaataatgtttggtcacacacataaagaaata-tttatttaataataaaaagaaaattgataaaata 39171001  T
Q  142 atgattgaatattttaagga 161  Q
    |||||||| |||||||||||    
T  39171002 atgattgagtattttaagga 39171021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 22220318 - 22220205
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatga 212  Q
    |||| ||| |||||||||||||||| ||  |||||||||||||| || |  |||||||||||||||||||    |||||| |||||||||| |||| |||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgta----caaacattattgatttgatcttttga 22220223  T
Q  213 ccataggagaatacctca 230  Q
    |||| | |||||||||||    
T  22220222 ccatggaagaatacctca 22220205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 45805455 - 45805645
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcac--acacataaagaaatannnnnnnnaatagtaaagaggaaattgata----- 136  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||  ||||||||| ||||          ||| |||||||||||||||||         
T  45805455 gagaaattctaatatggtcacatgaccaaataaaaagtgtttggtcacatacacataaacaaat-gttttttttataataaagaggaaattgataaataa 45805553  T
Q  137 --aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
      ||| ||| ||| |||||||||| ||||||||||||||||||||||     ||||||||||||||||| |||| | | ||| | |||||||||||    
T  45805554 ataaaaaataattaaatattttaaagaccatctttttatgtgtgtgt----gcaaacactattgatttgatcttgtaatcatggaagaatacctca 45805645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 25199125 - 25199064
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaa 103  Q
    |||||||||||||||||||| |   ||||||| |||||||||||||||||||| ||||||||    
T  25199125 aagagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacatataaagaa 25199064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 2008508 - 2008395
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||| ||||  |||||||||| ||||||  || ||||| | ||||||||||||||| |||     
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtg--tgtccaaatattattgatttggtcttgtgat 2008411  T
Q  214 cataggagaatacctc 229  Q
    ||| | ||||| ||||    
T  2008410 catggaagaatgcctc 2008395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 39056875 - 39056964
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtctt 208  Q
    |||| ||| ||| |||| |||||||  ||||||||||||||| ||||  ||||||||||||||||||    ||||||| ||| |||||||||||    
T  39056875 aatattaaggagaaaatcgataaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgt----ccaaacattatagatttggtctt 39056964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 28297782 - 28297723
Alignment:
Q  115 aatagtaaagaggaaattgataaaag-aatgattgaatattttaaggaccatctttttat 173  Q
    |||| ||||||||||||||||||||| |||||| |||||| |||||||  ||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttat 28297723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 14785082 - 14785046
Alignment:
Q  67 gaccaaataaaaagtgtttggtcacacacataaagaa 103  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  14785082 gaccaaataaatagtgtttggacacacacataaagaa 14785046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 226
Target Start/End: Complemental strand, 17056793 - 17056614
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtca--cacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||| ||||| |   |||||||||||| |||||||||||  ||||||||||||||||        |||| |||||||||||||||||||| |    
T  17056793 gagaaattctaaaatggtcacacgaccaaataaaa-gtgtttggtcatacacacataaagaaatattttttt-aataataaagaggaaattgataaaaaa 17056696  T
Q  142 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 226  Q
    |||||| |||||||||||||| || ||||||| |||||||||   |||||||||||||||||||||| ||||||| | |||||||    
T  17056695 atgattaaatattttaaggacaat-tttttatatgtgtgtat--tcaaacactattgatttggtcttgtgaccatggaagaatac 17056614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 20679770 - 20679956
Alignment:
Q  46 gaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca--cataaagaaatannnnnnnnaatagtaaagaggaaattgataaaagaa- 142  Q
    |||||||||||||||| |  |||| |||||||||||||||  |||||||  ||||||||||||        |||| |||||||||||||||||||| ||     
T  20679770 gaaattctaatatggtcagatgacgaaataaaaagtgtttaatcacacatacataaagaaatattttttttaataataaagaggaaattgataaaaaaaa 20679869  T
Q  143 tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
    | |||||||||||||| |||||| ||||| | ||||||| || |||||||||||||||||| ||||  ||||||   |||||||||||    
T  20679870 taattgaatattttaaagaccattttttt-tatgtgtgtgtgtccaaacactattgatttgatcttgagaccatgaaagaatacctca 20679956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 47833603 - 47833503
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 214  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||||   |||||||||||  ||||||| |||| |||||| |||||||||||  ||||    
T  47833603 aataataaagaggaaattgataaaataatgattgaatattttgaggatggtctttttatgt--gtgtatgtccaaccactatagatttggtcttgcgacc 47833506  T
Q  215 ata 217  Q
    |||    
T  47833505 ata 47833503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 226
Target Start/End: Original strand, 39503431 - 39503616
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaag 140  Q
    ||||||||| ||||||||| |  |||  |||||||||||||||| |||||||||  ||||||||||        |||| ||||||||||||||||||||     
T  39503431 agagaaattttaatatggtcacatgattaaataaaaagtgtttgatcacacacacataaagaaatattttttt-aataataaagaggaaattgataaaaa 39503529  T
Q  141 aatga---ttgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatac 226  Q
    ||  |   || |||||||||| || ||||||||||||||| ||| |   |||||||||||||||| ||||| ||||||||| |||||||    
T  39503530 aaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgtt--caaacactattgatttagtcttgtgaccatagaagaatac 39503616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 225
Target Start/End: Original strand, 46550629 - 46550813
Alignment:
Q  41 taagagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaata-nnnnnnnnaatagtaaagaggaaattgat-a 136  Q
    ||||||||||||||||||||| |   ||||||| ||||||||||||||  ||||||||||||||| ||         |||| ||||||| |||||||| |    
T  46550629 taagagaaattctaatatggtcacaagaccaaagaaaaagtgtttggtcacacacacataaagaagtatttttttttaataataaagagaaaattgataa 46550728  T
Q  137 aaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaata 225  Q
    |||  ||||||||||||||  ||||  |||||||||||| ||||| |    ||||| ||||||||||||||| ||||||| | ||||||    
T  46550729 aaatgatgattgaatatttagaggagaatctttttatgtatgtgttt----aaacattattgatttggtcttgtgaccatggaagaata 46550813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 47541737 - 47541876
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||| | | || |||| ||||||||||||||||||||||  |||| |||||        |||| |||  ||||||||||||||| |    
T  47541737 gagaaattctaatatggtcacgagatcaaagaaaaagtgtttggtcacacacacataaaaaaatattttttt-aataataagaaggaaattgataaaaaa 47541835  T
Q  142 -atgattgaatattttaaggaccatctttttatgtgtgtgt 181  Q
     ||||||||||||||| ||||  ||||||||||||||||||    
T  47541836 gatgattgaatattttgaggaaaatctttttatgtgtgtgt 47541876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 36364868 - 36364954
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtctt 208  Q
    |||||||||||| ||||||||||||  || || |||||||||||||||||| ||||||| |||||||    ||||||| |||||||||||||||    
T  36364868 aatagtaaagagaaaattgataaaa--ataat-gaatattttaaggaccatatttttatatgtgtgt----ccaaacattattgatttggtctt 36364954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 36364605 - 36364657
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 96  Q
    |||||||| ||||||||| | |||| |||||||||| ||||||||||||||||    
T  36364605 gagaaattttaatatggtcacgtgatcaaataaaaaatgtttggtcacacaca 36364657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 15827051 - 15827104
Alignment:
Q  43 agagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 96  Q
    ||||||||||||||||||||| | ||| ||| ||| |||||||||||| |||||    
T  15827051 agagaaattctaatatggttacgggactaaagaaatagtgtttggtcatacaca 15827104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 57 - 170
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgacc 214  Q
    |||| |||||| ||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||  || ||||||||||||||||||||||| ||| |    
T  57 aataataaagatgaaattgataaaaaaatgattgaatatttttaagactatctttttatgtatgtg--tgtccaaacactattgatttggtcttgtgatc 154  T
Q  215 ataggagaatacctca 230  Q
    || | |||||||||||    
T  155 atggaagaatacctca 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 36132854 - 36132667
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaatannnnnnnnaatagtaaagaggaaattgat-aaaag 140  Q
    |||||||||||||||||| || || ||||||||||||||||||||   |||||||||||||||||        |||| | ||||||||||| || ||||     
T  36132854 gagaaattctaatatggtcatatggccaaataaaaagtgtttggttatacacacataaagaaata-tttttttaataat-aagaggaaattaataaaaaa 36132757  T
Q  141 aatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctcaaaaa 234  Q
    ||||||| ||||||||||  ||||||||||||||||||| |    ||||| |||||| |||| ||||| |||| |||| |||||||||| ||||    
T  36132756 aatgattaaatattttaaaaaccatctttttatgtgtgtat----ccaaatactattaatttagtcttgtgactatagaagaatacctctaaaa 36132667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 229
Target Start/End: Complemental strand, 30208379 - 30208195
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||||||||||| |   ||||||| ||||||||||||||||||||||  ||||||| |         |||| ||| |||||||||||||||| |    
T  30208379 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacacataaagaagt-gtttttttaataataaggaggaaattgataaaaaa 30208281  T
Q  142 -atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
     |||||||||||||| | |||  |||||||||||| | ||| |  ||||||| ||||||||||||||||||||||| | ||||||||||    
T  30208280 gatgattgaatatttga-ggagaatctttttatgtatatgtgt--ccaaacattattgatttggtcttatgaccatggaagaatacctc 30208195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 40719821 - 40720010
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcaca----cacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaa 139  Q
    ||||||||||||||||||    |||||||| ||||||||||||||||||    ||||||||||| ||        |||| ||| ||||||||||||||||    
T  40719821 gagaaattctaatatggtcgcatgaccaaagaaaaagtgtttggtcacatacacacataaagaagtatttttta-aataataaggaggaaattgataaaa 40719919  T
Q  140 gaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctca 230  Q
     ||  |||||||||||||| ||||  |||||||||||||||||  || ||||||| |||| ||||  |||| ||||||| | |||||||||||    
T  40719920 aaagatgattgaatattttgaggagaatctttttatgtgtgtg--tgtccaaacattattaatttaatcttttgaccatggaagaatacctca 40720010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 31333091 - 31333258
Alignment:
Q  45 agaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca--taaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga- 141  Q
    ||||||||||||||||| |  ||| |||| ||| ||||||||||||||||||  ||||||||||        |||| ||| ||| ||| |||||||| |     
T  31333091 agaaattctaatatggtcacatgatcaaagaaatagtgtttggtcacacacacataaagaaatattttttt-aataataaggagaaaactgataaaaaag 31333189  T
Q  142 atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||||||||||||||||| |  |||||||||||||||||||  |||||||| | ||||||||||||| ||||    
T  31333190 atgattgaatattttaagtaaaatctttttatgtgtgtgta--accaaaca-ttttgatttggtcttgtgac 31333258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 42056787 - 42056680
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| ||| ||| |||||||||||| | ||||||||||||||||| ||  |||||||||||| |||||    ||||||| ||||||||||||||| ||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgt----ccaaacattattgatttggtcttgtgac 42056692  T
Q  214 cataggagaata 225  Q
    ||| | ||||||    
T  42056691 catggaagaata 42056680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 1162045 - 1162183
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggt--cacacacataaagaaatannnnnnnnaatagtaaagaggaaattgataaaaga 141  Q
    |||||||||| ||||||| ||  ||| ||| ||||||||||||||  ||||||||||||||||||        |||| |||||||||||||||||| | |    
T  1162045 gagaaattcttatatggtcataggactaaagaaaaagtgtttggtcacacacacataaagaaata-tttttttaataataaagaggaaattgataagaaa 1162143  T
Q  142 atgattgaatattttaaggaccatctttttatgtgtgtgt 181  Q
       |||||||||||| ||||  ||| ||||||||||||||    
T  1162144 gacattgaatattttgaggagaatccttttatgtgtgtgt 1162183  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 35179258 - 35179156
Alignment:
Q  125 aggaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggaga 222  Q
    ||||||||||||||| ||  | |||||||||||| || |  |||||||||| |||||||    ||||||| |||||||||||||||||||||||   |||    
T  35179258 aggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgt----ccaaacattattgatttggtcttatgaccatgaaaga 35179163  T
Q  223 atacctc 229  Q
    |||||||    
T  35179162 atacctc 35179156  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 16782307 - 16782365
Alignment:
Q  40 ttaagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacata 98  Q
    ||||| |||||||||||||| | ||  ||||||||||| ||||||||| ||||||||||    
T  16782307 ttaagcgaaattctaatatgatcataagaccaaataaatagtgtttggacacacacata 16782365  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 39402038 - 39402136
Alignment:
Q  127 gaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 224  Q
    ||||||||||||| ||  |||||||||||||| ||||  |||||||||  ||| ||||||  |||| | ||||||||||||||| ||||||| | |||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatcttttta--tgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaat 39402135  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 6048653 - 6048710
Alignment:
Q  167 tttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 224  Q
    ||||||||||||||| ||||||||||||||| |||||   || ||||||||| |||||    
T  6048653 tttttatgtgtgtgtgtgaccaaacactattcatttgtgtttgtgaccatagaagaat 6048710  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 7080262 - 7080149
Alignment:
Q  115 aatagtaaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgac 213  Q
    |||| |||||| ||||||||||||| | || |||||||||||| | ||  |||||||||||||||||| |  ||||||| ||||||||||||| | ||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgt--ccaaacattattgatttggtcatgtgac 7080165  T
Q  214 cataggagaatacctc 229  Q
    ||||| ||||||||||    
T  7080164 catagaagaatacctc 7080149  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 2141175 - 2141222
Alignment:
Q  47 aaattctaatatggttatgtgaccaaataaaaagtgtttggtcacaca 94  Q
    ||||||||||||||| || ||| |||| ||||||||||||||||||||    
T  2141175 aaattctaatatggtcatatgatcaaagaaaaagtgtttggtcacaca 2141222  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 994930 - 994876
Alignment:
Q  42 aagagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacaca 96  Q
    |||||||||||||| ||||| |   ||||||||||| ||||||||||||||||||    
T  994930 aagagaaattctaacatggtcacaagaccaaataaatagtgtttggtcacacaca 994876  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 994874 - 994915
Alignment:
Q  175 tgtgtgtatgaccaaacactattgatttggtcttatgaccat 216  Q
    ||||||| ||||||||||||||| |||||||||| |||||||    
T  994874 tgtgtgtgtgaccaaacactatttatttggtcttgtgaccat 994915  T

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Target: scaffold0830 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 5379 - 5462
Alignment:
Q  115 aatagtaaagaggaaattgataaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgat 200  Q
    |||| |||||| ||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||  || |||||||||||||||    
T  5379 aataataaagatgaaattgataaaaaaatgattgaatatttttaagactatctttttatgtatgtg--tgtccaaacactattgat 5462  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 26017 - 25955
Alignment:
Q  44 gagaaattctaatatggttatgtgaccaaataaaaagtgtttggtcacacacataaagaaata 106  Q
    |||||||||||||||||| |  |||||| |  |||||||||||| ||||||||||||||||||    
T  26017 gagaaattctaatatggtcacatgaccataggaaaagtgtttgggcacacacataaagaaata 25955  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 25773 - 25684
Alignment:
Q  136 aaaagaatgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaatacctc 229  Q
    |||| |||||||||||||||| | ||  ||||||||| ||||||||    ||||||| ||||||||||||||  ||| ||| | ||||||||||    
T  25773 aaaaaaatgattgaatattttgatgaaaatctttttacgtgtgtgt----ccaaacattattgatttggtctcgtgatcatggaagaatacctc 25684  T

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Target: scaffold0288 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 17974 - 18030
Alignment:
Q  41 taagagaaattctaatatggttatgtgaccaaa-taaaaagtgtttggtcacacaca 96  Q
    ||||||||||||||||||||| | | |||||||  ||||||||||||||||||||||    
T  17974 taagagaaattctaatatggtcacgggaccaaagaaaaaagtgtttggtcacacaca 18030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 35464 - 35366
Alignment:
Q  127 gaaattgataaaagaa--tgattgaatattttaaggaccatctttttatgtgtgtgtatgaccaaacactattgatttggtcttatgaccataggagaat 224  Q
    ||||||||||||| ||  |||||||||||||| ||||  |||||||||  ||| ||||||  |||| | ||||||||||||||| ||||||| | |||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatcttttta--tgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaat 35367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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