View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_36 (Length: 251)
Name: NF19618_low_36
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 4896794 - 4896922
Alignment:
| Q |
111 |
gagaattgctcctccaaacagtgaataatttgttgnnnnnnnggtcatcttttgtatcagttttaaaaatatatatgctctttgatccacccaaagttct |
210 |
Q |
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| T |
4896794 |
gagaattgctcttccaaacagtgaataatttgttgattttttggtcatcctttgtatttgttttaaaaatatatttgctttatgatccacccaaagttct |
4896893 |
T |
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| Q |
211 |
aaaaaccactaacacaccatttcttttca |
239 |
Q |
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| T |
4896894 |
aaaaaccactaacataccatttcttttca |
4896922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 4902588 - 4902697
Alignment:
| Q |
31 |
ctttatataatgctgaaacttaccactactcttgtactcactttgaacct---taacaacaacttgttcaataaattcccttcgagaattgctcctccaa |
127 |
Q |
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| T |
4902588 |
ctttatataatgttgaaacttaccactactcttgtactcactttgaacctcaacaacaacaacttgttcaataaattcccttcgaaaattgctcttccaa |
4902687 |
T |
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| Q |
128 |
acagtgaata |
137 |
Q |
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| T |
4902688 |
agagtgaata |
4902697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 4896572 - 4896647
Alignment:
| Q |
33 |
ttatataatgctgaaacttaccactactcttgtactcactttgaaccttaacaacaacttgttcaataaattccctt |
109 |
Q |
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| T |
4896572 |
ttatataatgctgaaacttaccactactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt |
4896647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 4908434 - 4908538
Alignment:
| Q |
31 |
ctttatataatgctgaaacttacca-----ctactcttgtactcactttgaaccttaacaacaacttgttcaataaattcccttcgagaattgctcctcc |
125 |
Q |
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| T |
4908434 |
ctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttgagaattgttcttcc |
4908533 |
T |
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| Q |
126 |
aaaca |
130 |
Q |
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||||| |
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| T |
4908534 |
aaaca |
4908538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4896349 - 4896388
Alignment:
| Q |
1 |
gtccttcgtggaaatcctttaacttaacaactttatataa |
40 |
Q |
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| T |
4896349 |
gtccttcgtggaaatcctttaacttaacaactttatataa |
4896388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 4916375 - 4916434
Alignment:
| Q |
31 |
ctttatataatg-ctgaaacttaccactactcttgtactcactttgaaccttaacaacaa |
89 |
Q |
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| T |
4916375 |
ctttatataatggctgaaacttatcactactcttgcactcactttgaacctcaacaacaa |
4916434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 4929887 - 4929958
Alignment:
| Q |
170 |
gttttaaaaatatatatgctctttgatccacccaaagttctaaaaaccactaacacaccatttcttttcatc |
241 |
Q |
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| T |
4929887 |
gttttaaaaatatataggctctttgatccacccaatattctaaaaatcactaacagtccttttattttcatc |
4929958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 4902698 - 4902737
Alignment:
| Q |
189 |
tctttgatccacccaaagttctaaaaaccactaacacacc |
228 |
Q |
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| T |
4902698 |
tctttgatcctcccaaagttctaaaaatcactaacacacc |
4902737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 4949824 - 4949904
Alignment:
| Q |
161 |
tttgtatcagttttaaaaatatatatgctctttgatccacccaaagttctaaaaaccactaacacaccatttcttttcatc |
241 |
Q |
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|||| ||| ||||||||||||||| ||| ||||||||||||| |||| |||| |||||| || || |||||||||||| |
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| T |
4949824 |
tttggatcggttttaaaaatatattgcctccttgatccacccaatattctgaaaatcactaatactccttttcttttcatc |
4949904 |
T |
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