View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_4 (Length: 652)
Name: NF19618_low_4
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 636
Target Start/End: Original strand, 6762248 - 6762863
Alignment:
| Q |
9 |
catcatcaaaactcaacctgcaataagtgcagataacattaatgtaaaatttccttctcccgaccacacagaaaccatagacaacacataaacaacatca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6762248 |
catcatcaaaactcaacctgcaataagtgcagataacattaatgtaaaatttccttctcccgaccacacagaaaccatagacaacacatgaacaacatca |
6762347 |
T |
|
| Q |
109 |
ctcagccttactcacaaaactaaactctctcaaatccctacacattcaagcaaaattcagctgcagtctaaacaaaaactacattccgaaaaaatcacaa |
208 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6762348 |
ctcagccttattcacaaaactaaactct--caaatccctacacattcaagcaaaattcagctgcagtctaaacaaaaactacattccgaaaaaatcacaa |
6762445 |
T |
|
| Q |
209 |
aacaacaattcctcttcagaaaccaaccacaggcaacatttcacattcacataagctaaccatctaagcacctgtttggattcacggctgcagcatcatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
6762446 |
aacaacaattcctcttcagaaaccaaccacaggcaacatttcacattcacataatctaaccatctaagcaactgtttggattcacggctgcagcaccatt |
6762545 |
T |
|
| Q |
309 |
ttcgtgtcccgaggcattattaacgtgaaaacagaggagctatagaatgcggcttccacgttaacgcgcctctttgccgcannnnnnncttaaagtgccg |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6762546 |
ttcgtgtcccgaggcattattaacgtgaaaaccgagaagctatagaatgcggcttccacgttaacgcgcctctttgccgca-ttttttcttaaagtgccg |
6762644 |
T |
|
| Q |
409 |
cagtaccaaacaccctataagagacattgaatcataaaccataaacccaaaaaccaactcatagggctaaccatctaagactaagatacattgaacttca |
508 |
Q |
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| T |
6762645 |
cagtaccaaacaccctataagagacattgaatcataaaccataaacccaaaaaccaactcatagggctaa-----------taagatacattgaacttca |
6762733 |
T |
|
| Q |
509 |
aataagggatatatggttggtttagaggatacatatatataaggtaggtttcgtaacgtggttaagtatgtcgagcatttgatcctcactctcagc--at |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
6762734 |
aataagggatatatggttggtttagaggatacatatatataaggtaggtttcgtaacgtggttaagtatgtcgagcatttgatcctcactctctgcatat |
6762833 |
T |
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| Q |
607 |
ataataatactaacatttactaacaatact |
636 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6762834 |
ataataatactaacatttactaacaatact |
6762863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 5086675 - 5086743
Alignment:
| Q |
282 |
gtttggattcacggctgcagcatcattttcgtgtcccgaggcattattaacgtgaaaacagaggagcta |
350 |
Q |
| |
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| T |
5086675 |
gtttggattcacggctgcagtatcattttcgcgtcttaaggcattattaacgtgaaaacaaagaagcta |
5086743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 36108722 - 36108768
Alignment:
| Q |
272 |
ctaagcacctgtttggattcacggctgcagcatcattttcgtgtccc |
318 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36108722 |
ctaaacacctgtttggattcacggctgcagcatcattttcgcgtccc |
36108768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 36109265 - 36109346
Alignment:
| Q |
346 |
agctatagaatgcggcttccacgttaacgcgcctctttgccgcannnnnnncttaaagtgccgcagtaccaaacaccctataa |
428 |
Q |
| |
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||||||| ||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
36109265 |
agctatacaatgcagcttccactttaacgcgcctctttgccgca-atttttctaaaagtgccacagtaccaaacaccctataa |
36109346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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