View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19618_low_44 (Length: 239)

Name: NF19618_low_44
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19618_low_44
NF19618_low_44
[»] chr7 (2 HSPs)
chr7 (28-221)||(24316993-24317186)
chr7 (1-37)||(28643107-28643143)
[»] scaffold0263 (1 HSPs)
scaffold0263 (139-185)||(13130-13176)
[»] scaffold0002 (1 HSPs)
scaffold0002 (139-185)||(91758-91804)
[»] chr6 (2 HSPs)
chr6 (136-185)||(24725713-24725761)
chr6 (1-33)||(34379344-34379376)
[»] chr1 (4 HSPs)
chr1 (141-185)||(2590915-2590959)
chr1 (1-38)||(35937663-35937700)
chr1 (8-36)||(26674580-26674608)
chr1 (1-29)||(44806580-44806608)
[»] chr2 (5 HSPs)
chr2 (1-35)||(644746-644780)
chr2 (1-35)||(7402280-7402314)
chr2 (1-37)||(5038399-5038435)
chr2 (1-29)||(13499836-13499864)
chr2 (1-29)||(18549289-18549317)
[»] chr8 (3 HSPs)
chr8 (1-30)||(8082506-8082535)
chr8 (1-33)||(7484227-7484259)
chr8 (1-37)||(42129129-42129165)
[»] scaffold0175 (1 HSPs)
scaffold0175 (1-29)||(26443-26471)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-37)||(262624-262660)
[»] chr4 (2 HSPs)
chr4 (1-29)||(32806977-32807005)
chr4 (1-33)||(55935595-55935627)
[»] chr3 (1 HSPs)
chr3 (1-37)||(55453871-55453907)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 24317186 - 24316993
Alignment:
Q  28 tatattttatcgtcatgttttaggcgaaggctacattgaactctctttgtaagtgtctattccaccataggccatgcttgacatcattgaattaagcaan 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  24317186 tatattttatcgtcatgttttaggcgaaggctacattgaactctctttgtaagtgtctattccaccataggccatgcttgacaacattgaattaagcaga 24317087  T
Q  128 nnnnnnnnaagaggctaaaatgaaatttatataaccatcaaaagagtcaaccaacacataagatattaaagatccagttaagttataacagact 221  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  24317086 ttttttttaagaggctaaaatgaaatttatataaccatcaaaagagtcaaccaacacataagatattaaagattcagttaagttataatagact 24316993  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28643107 - 28643143
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttat 37  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  28643107 tataggaaccaaaaacttaattaaccctatgttttat 28643143  T

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Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 13130 - 13176
Alignment:
Q  139 aggctaaaatgaaatttatataaccatcaaaagagtcaaccaacaca 185  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13130 aggctaaaatgaaatttatataaccatcaaaagagtcaaccagcaca 13176  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 91758 - 91804
Alignment:
Q  139 aggctaaaatgaaatttatataaccatcaaaagagtcaaccaacaca 185  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  91758 aggctaaaatgaaatttatataaccatcaaaagagtcaaccagcaca 91804  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 24725761 - 24725713
Alignment:
Q  136 aagaggctaaaatgaaatttatataaccatcaaaagagtcaaccaacaca 185  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24725761 aagaggctaaaatgaaattta-ataaccatcaaaagagtcaaccaacaca 24725713  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34379344 - 34379376
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatatt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  34379344 tataggaaccaaaaacttaattaaccctatatt 34379376  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 2590915 - 2590959
Alignment:
Q  141 gctaaaatgaaatttatataaccatcaaaagagtcaaccaacaca 185  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  2590915 gctaaaatgaaatttatataactatcaaaagagtcaaccagcaca 2590959  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35937700 - 35937663
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttatc 38  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  35937700 tatagggactaaaaacttaattaaccctattttttatc 35937663  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 26674608 - 26674580
Alignment:
Q  8 actaaaaacttaattaaccctatatttta 36  Q
    |||||||||||||||||||||||||||||    
T  26674608 actaaaaacttaattaaccctatatttta 26674580  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 44806608 - 44806580
Alignment:
Q  1 tataggaactaaaaacttaattaacccta 29  Q
    |||||||||||||||||||||||||||||    
T  44806608 tataggaactaaaaacttaattaacccta 44806580  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 644780 - 644746
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatatttt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  644780 tatagggactaaaaacttaattaaccctatatttt 644746  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7402280 - 7402314
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatatttt 35  Q
    ||||||||| |||||||||||||||||||||||||    
T  7402280 tataggaaccaaaaacttaattaaccctatatttt 7402314  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5038399 - 5038435
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttat 37  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  5038399 tatagggactaaaaacttaattaaccctattttttat 5038435  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13499864 - 13499836
Alignment:
Q  1 tataggaactaaaaacttaattaacccta 29  Q
    |||||||||||||||||||||||||||||    
T  13499864 tataggaactaaaaacttaattaacccta 13499836  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18549317 - 18549289
Alignment:
Q  1 tataggaactaaaaacttaattaacccta 29  Q
    |||||||||||||||||||||||||||||    
T  18549317 tataggaactaaaaacttaattaacccta 18549289  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8082535 - 8082506
Alignment:
Q  1 tataggaactaaaaacttaattaaccctat 30  Q
    ||||||||||||||||||||||||||||||    
T  8082535 tataggaactaaaaacttaattaaccctat 8082506  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7484227 - 7484259
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatatt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  7484227 tataggaaccaaaaacttaattaaccctatatt 7484259  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42129165 - 42129129
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttat 37  Q
    |||||| |||||||||||||||||||||| |||||||    
T  42129165 tatagggactaaaaacttaattaaccctaaattttat 42129129  T

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Target: scaffold0175 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26471 - 26443
Alignment:
Q  1 tataggaactaaaaacttaattaacccta 29  Q
    |||||||||||||||||||||||||||||    
T  26471 tataggaactaaaaacttaattaacccta 26443  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 262660 - 262624
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttat 37  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  262660 tatagggactaaaaacttaattaaccctttattttat 262624  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32807005 - 32806977
Alignment:
Q  1 tataggaactaaaaacttaattaacccta 29  Q
    |||||||||||||||||||||||||||||    
T  32807005 tataggaactaaaaacttaattaacccta 32806977  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 55935595 - 55935627
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatatt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  55935595 tataggaaccaaaaacttaattaaccctatatt 55935627  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55453871 - 55453907
Alignment:
Q  1 tataggaactaaaaacttaattaaccctatattttat 37  Q
    |||||| |||||||||||||||||||||| |||||||    
T  55453871 tatagggactaaaaacttaattaaccctagattttat 55453907  T

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