View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_47 (Length: 228)
Name: NF19618_low_47
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3381168 - 3380974
Alignment:
| Q |
1 |
cttgttggaagagataaaaatcactattcttccttttaattatcattttaattttcataaatgtgtttgataagaaaactttgatcaattatttttattt |
100 |
Q |
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| T |
3381168 |
cttgttggaagagataaaaatcactattcttccttttaattatcattttaattttcataaatgtgtttgataagaaaactttgatcaattatttttattt |
3381069 |
T |
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| Q |
101 |
ggctccattgataactacaaagttaattcatgtgtaactatttcctttattgagaaaaggagcaacaccaaaactaatgaatatataaaggtgatca |
197 |
Q |
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| T |
3381068 |
ggctccattgataactacaaagttaattcatgtgtaactatttcctttattgagaaaaggagcaacaccaaaactaatgaa--tataaaggtgatca |
3380974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2844616 - 2844665
Alignment:
| Q |
168 |
ccaaaactaatgaatatataaaggtgatcataatgtggaacaaacatgttaga |
220 |
Q |
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| T |
2844616 |
ccaaaactaatgaatata---aggtgatcataatgtggaacaaatatgttaga |
2844665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2856443 - 2856492
Alignment:
| Q |
168 |
ccaaaactaatgaatatataaaggtgatcataatgtggaacaaacatgttaga |
220 |
Q |
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| T |
2856443 |
ccaaaactaatgaatata---aggtgatcataatgtggaacaaatatgttaga |
2856492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2874053 - 2874102
Alignment:
| Q |
168 |
ccaaaactaatgaatatataaaggtgatcataatgtggaacaaacatgttaga |
220 |
Q |
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| T |
2874053 |
ccaaaactaatgaatata---aggtgatcataatatggaacaaatatgttaga |
2874102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 2904559 - 2904608
Alignment:
| Q |
168 |
ccaaaactaatgaatatataaaggtgatcataatgtggaacaaacatgttaga |
220 |
Q |
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|||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
2904559 |
ccaaaactaatgaatata---aggtgataataatgtggaataaacatgttaga |
2904608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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