View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_48 (Length: 217)
Name: NF19618_low_48
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 37256949 - 37256852
Alignment:
| Q |
104 |
tctatggatcaaagcatccccctgtagtctaacgtacttcatatatgtatttatcagaaaatcccaaactcgatcagcaggtagaaacaaatacatca |
201 |
Q |
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| T |
37256949 |
tctatggatcaaagcatccccctctagtctaacgtacttcatatatgtatttatcagaaaatcccaaactcgatcagcaggtagaaacaaatacatca |
37256852 |
T |
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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 37257386 - 37257286
Alignment:
| Q |
2 |
aaaaatgtcaataagcttctcatgggtttatcaaacatgtctcagttaaaaggtgaaactatagataatagtatagcttccttctgcctaatccaattat |
101 |
Q |
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| T |
37257386 |
aaaaatgtcaataagcttctcatgggtttctcaaacagttctcagttaaaaggtgaaactatagataatagtatagcttccttctgcctaatccaattat |
37257287 |
T |
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| Q |
102 |
a |
102 |
Q |
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| T |
37257286 |
a |
37257286 |
T |
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