View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_49 (Length: 214)
Name: NF19618_low_49
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 8594469 - 8594326
Alignment:
| Q |
57 |
acacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaataggagaggc |
153 |
Q |
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| T |
8594469 |
acacattttttggttctcagtacacagttagttggcattttcttcataaaaaagtggcataaactttagacttctactgatatataaaaataggagaggc |
8594370 |
T |
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| Q |
154 |
aaggaagggtagagaagaagagtaacaaaatgaataacacttgt |
197 |
Q |
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| T |
8594369 |
aaggatgggtagagaagaagagtaacaaaatgaataacacttgt |
8594326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 8611953 - 8612099
Alignment:
| Q |
55 |
aaacacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaa-taggaga |
150 |
Q |
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| T |
8611953 |
aaacacattttttggttctcagtacacagttagttggcattttcttcataaaaatgtggcctaaactctagacttctattgatatataaaaattaggaga |
8612052 |
T |
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| Q |
151 |
ggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgt |
197 |
Q |
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| T |
8612053 |
ggcaaggaagggtagagaagaatagtagcaaaaagaataacacttgt |
8612099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 8646697 - 8646551
Alignment:
| Q |
55 |
aaacacattttttg-ttctcagtact--gttagttggcattttcttcataaaaaagtggcataaactctagacttctactgatatataaaaa-taggaga |
150 |
Q |
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| T |
8646697 |
aaacacattttttggttctcagtacacagttagttggcattttcttcataaaaatgtggcataaactctagacttctattgatatataaaaattaggaga |
8646598 |
T |
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| Q |
151 |
ggcaaggaagggtagagaagaagagtaacaaaatgaataacacttgt |
197 |
Q |
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| T |
8646597 |
agcaaggaagggtagagaagaatagtagcaaaaagaataacacttgt |
8646551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 8557112 - 8557279
Alignment:
| Q |
12 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcagtactgttagttggcattttcttcataaaaaagtggc |
111 |
Q |
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| T |
8557112 |
aagaaaataatgcctatcacatgtcttctgctcgcaaccaaacaaacaca------------------gttagttggcattttcttcataaatatgtggc |
8557193 |
T |
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| Q |
112 |
ataaactctagacttctactgatat--ataaaaataggagaggcaaggaagggtagagaagaagagtaacaaaatgaataacactt |
195 |
Q |
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| T |
8557194 |
ataaactctagaattctactgatatatataaaaataggagaggcaaggaagggtagagaagaagagtagcaaaaagaatcacactt |
8557279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 8567063 - 8566922
Alignment:
| Q |
62 |
ttttttgttctcagtactgttagttggcattttcttcataaaaaagtggc--ataaactctagacttctactgat----atataaaaataggagaggcaa |
155 |
Q |
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| T |
8567063 |
ttttttgttcccagtacagttagttggcattttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaa |
8566964 |
T |
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| Q |
156 |
ggaagggtagagaagaagagtaacaaaatgaataacacttgt |
197 |
Q |
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| T |
8566963 |
ggaagggtagagaagaatagtagcaaaaagaacaacagttgt |
8566922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 8555620 - 8555557
Alignment:
| Q |
12 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcag |
75 |
Q |
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| T |
8555620 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacacattttttgttctcag |
8555557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8567133 - 8567085
Alignment:
| Q |
12 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacac |
60 |
Q |
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| T |
8567133 |
aagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacac |
8567085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8594527 - 8594481
Alignment:
| Q |
12 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacac |
60 |
Q |
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| T |
8594527 |
aagaaaatcatgcctatcacatgtttt--gctcgcaaccaaacaaacac |
8594481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 8646753 - 8646707
Alignment:
| Q |
12 |
aagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacac |
60 |
Q |
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| T |
8646753 |
aagaaaatcatgcctatcacatgtttt--gctcgcaaccaaacaaacac |
8646707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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