View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_6 (Length: 560)
Name: NF19618_low_6
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_6 |
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| [»] scaffold0491 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 436
Target Start/End: Complemental strand, 2320299 - 2320181
Alignment:
| Q |
318 |
aaagtttccatagagtctgttgtgagatggatccaattttgtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagag |
417 |
Q |
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| T |
2320299 |
aaagtttccattgagtctgttgtcagatagatgtaatgtcgttatatttttcaggaaacccaactcatgtggaatggatccttgaatgttattacaagag |
2320200 |
T |
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| Q |
418 |
atttttagctactctaatt |
436 |
Q |
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| T |
2320199 |
atgtctaggtagtctaatt |
2320181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 2327238 - 2327178
Alignment:
| Q |
225 |
gtctattgacttagtcaattagaaagtcttgtgcataagtgtcccttttagggtgcaagtt |
285 |
Q |
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| T |
2327238 |
gtctatagatttagtcaattacaaagtcttgtgcataagtgtcccttttagggtccaagtt |
2327178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 424
Target Start/End: Complemental strand, 1105247 - 1105141
Alignment:
| Q |
318 |
aaagtttccatagagtctgttgtgagatggatccaattttgtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagag |
417 |
Q |
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| T |
1105247 |
aaagtttccattgagtctattgtgagatagatctaatatagtgagattcttcaagaaccccaactcaagaggaatggaaccttgaatgttgttgtgagag |
1105148 |
T |
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| Q |
418 |
attttta |
424 |
Q |
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| T |
1105147 |
atgttta |
1105141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 2328607 - 2328547
Alignment:
| Q |
376 |
cccaactcatgtgtaatggatccttgaatgttattataagagatttttagctactctaatt |
436 |
Q |
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| T |
2328607 |
cccaactcgtgaggaatggatccttgaatgttattataagagatgtctaggtactctaatt |
2328547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 436
Target Start/End: Complemental strand, 2336548 - 2336470
Alignment:
| Q |
358 |
gtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagagatttttagctactctaatt |
436 |
Q |
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| T |
2336548 |
gtgagattttttaggaaccccaaaccataaggaatggatccttgaatgttattataagacatgtctaggtactctaatt |
2336470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 2032 - 2138
Alignment:
| Q |
319 |
aagtttccatagagtctgttgtgagatggatccaattttgtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagaga |
418 |
Q |
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|||||||||| |||||| ||||||||| |||| ||| | ||| |||| | ||||| ||||||||| | | |||||| ||||||||||| || | ||||| |
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| T |
2032 |
aagtttccattgagtctattgtgagatagatctaatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgttgttgtgagaga |
2131 |
T |
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| Q |
419 |
tttttag |
425 |
Q |
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| T |
2132 |
tgtttag |
2138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 18740154 - 18740260
Alignment:
| Q |
319 |
aagtttccatagagtctgttgtgagatggatccaattttgtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagaga |
418 |
Q |
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| T |
18740154 |
aagtttccattgagtctattgtgagatagatctaatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgttgttgtgagaga |
18740253 |
T |
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| Q |
419 |
tttttag |
425 |
Q |
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| T |
18740254 |
tgtttag |
18740260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 18745118 - 18745224
Alignment:
| Q |
319 |
aagtttccatagagtctgttgtgagatggatccaattttgtgagatttttcaggaaacccaactcatgtgtaatggatccttgaatgttattataagaga |
418 |
Q |
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|||||||||| |||||| ||||||||| |||| ||| | ||| |||| | ||||| ||||||||| | | |||||| ||||||||||| || | ||||| |
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| T |
18745118 |
aagtttccattgagtctattgtgagatagatctaatgtgatgatatttctgaggaaccccaactcaagaggaatggaaccttgaatgttgttgtgagaga |
18745217 |
T |
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| Q |
419 |
tttttag |
425 |
Q |
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| T |
18745218 |
tgtttag |
18745224 |
T |
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