View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_8 (Length: 471)
Name: NF19618_low_8
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 25898785 - 25898341
Alignment:
| Q |
1 |
atctcgaagaatatcattcccgacacacaagagagcattacattgcaggattgcaataccgccaaaaaatatgactgcaaacttatcacttcaaataggg |
100 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25898785 |
atctcgatcaatgtcattcccgacacacaagagagcattacattgcaggattggaataccgccaaaaaatatgactgcaaacttatcactttaaataggg |
25898686 |
T |
|
| Q |
101 |
gtccgaatgaaaaatatttaagaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatagcttggtctttgatcttgaggatcttc |
200 |
Q |
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| T |
25898685 |
gtccgaatgaaaaatattta-gaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatagtttggtctttgatcttgaggatcctc |
25898587 |
T |
|
| Q |
201 |
ctaagtcctaactcactatttgttgagattgttcgccagaaaggtcgtcattagacttacaagcatatcatatgaggttcctcttcatgtgttttatttt |
300 |
Q |
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| T |
25898586 |
ctaa-------ctcactatttgttgagattgttcgccagaaaggtcgtcattagacttgcaagcatatcatataaggttcctcttcatgtgttttatttt |
25898494 |
T |
|
| Q |
301 |
gttgtaaatacctgttatgcctcaaacaatggcattgtgttttgagtttttctaccatgatactcctaattcctatgttcctataagttgtgtgctttaa |
400 |
Q |
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| T |
25898493 |
gttgtaaatacctgttatgcctcagacaatggcattgtgttttgagtttttctcccatgatactcctaattcctatgttcctataagttgtgtgctttaa |
25898394 |
T |
|
| Q |
401 |
tattgttcctatgatctgcatcacttggatattaaggcattgtgtgatgtgtt |
453 |
Q |
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| T |
25898393 |
tattgttcctatgatctgcattacttggatcttaagacattgtgtgatgtgtt |
25898341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 6230039 - 6230073
Alignment:
| Q |
329 |
atggcattgtgttttgagtttttctaccatgatac |
363 |
Q |
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| T |
6230039 |
atggcattgtgttttgagttttgctaccatgatac |
6230073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 37423146 - 37423041
Alignment:
| Q |
76 |
tgcaaacttatcacttcaaataggggtccgaatgaaaaatatttaagaggaagattggaacaaatttctgaaggatagtaaattgcgtcaaggggatagc |
175 |
Q |
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|||||||||| ||||||||| |||||||| |||||||||||| || || || |||||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
37423146 |
tgcaaacttaccacttcaaacaggggtccaaatgaaaaatatctagga-gaggattggaacaaatttctgaa-gataacaaattgcgtcaaagggatagg |
37423049 |
T |
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| Q |
176 |
ttggtctt |
183 |
Q |
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||| |||| |
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| T |
37423048 |
ttgttctt |
37423041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 446
Target Start/End: Original strand, 46006442 - 46006519
Alignment:
| Q |
369 |
attcctatgttcctataagttgtgtgctttaatattgttcctatgatctgcatcacttggatattaaggcattgtgtg |
446 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||| || |||||||| ||| ||||| |||| |||| |
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| T |
46006442 |
attcctatgttcctataatttatgtgctttaatattgttcctatgacctacatcactttgattttaagacattttgtg |
46006519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 12866192 - 12866237
Alignment:
| Q |
369 |
attcctatgttcctataagttgtgtgctttaatattgttcctatga |
414 |
Q |
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| T |
12866192 |
attcctatgttcctataatttatgtgctttaatattgttcctatga |
12866237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 12834214 - 12834259
Alignment:
| Q |
369 |
attcctatgttcctataagttgtgtgctttaatattgttcctatga |
414 |
Q |
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||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
12834214 |
attcctacgttcctataatttatgtgctttaatattgttcctatga |
12834259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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