View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19618_low_9 (Length: 468)
Name: NF19618_low_9
Description: NF19618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19618_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Original strand, 35249276 - 35249706
Alignment:
| Q |
20 |
aatcaagaggagtacttttcttgctttatctatttgcaccggtcacatattaaactcaattaaagaattttcaattctaaattttttagagtgatcgatt |
119 |
Q |
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| T |
35249276 |
aatcaagaggagtacttctcttgctttatctatttgcaccggtcacatattaaactcaattaaagaattttcaattctaaattttttagagtgatcgatt |
35249375 |
T |
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| Q |
120 |
ttcataaaaaagatcaatatattatttggcggatttaaaatcttccatgtgtttggtttaagtgtaaatacaaatgatgcacctagactctataaacctt |
219 |
Q |
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| T |
35249376 |
ttcataaaaaagctcaatatattatttggcggatttaaaatcttccatgtgtttggtttaagtgtaaatacaaatgatgcacctagactctataaacctt |
35249475 |
T |
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| Q |
220 |
tccttttggaagtgtaactaacaaatagcctaggtgtcttcaaacccacatggggtgataccagtacatcaaaaataccaagcagagaattataaaaaat |
319 |
Q |
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| T |
35249476 |
tccttttagaagtgtaactaacaaatagcctaggtgtcttcaaacccacatggggtgatactagtacatcaaaaataccaagcagggaattataaaaaat |
35249575 |
T |
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| Q |
320 |
agaaggtacctgatgtatagttatcaattgaaatttttgaggtctaaccaaaacaacgatcatctattttttattaacaacacttgttagaccttggttc |
419 |
Q |
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| T |
35249576 |
agaaggtacctgatgtatagttatcaattgaaatttttgaggtctaaccaaaacaacgatcacctatttttgattaacaacacttgttagaccttggttc |
35249675 |
T |
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| Q |
420 |
tcttgatccttgtgacttgtgaggggtgtgg |
450 |
Q |
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| T |
35249676 |
tcttgatccttgtgacttgtgaggggtgtgg |
35249706 |
T |
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