View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19619_high_4 (Length: 366)
Name: NF19619_high_4
Description: NF19619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19619_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 11155844 - 11155510
Alignment:
| Q |
15 |
gggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgtattcaccacacatgttgacaaccaaatcaatattttaat |
114 |
Q |
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| T |
11155844 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
11155745 |
T |
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| Q |
115 |
tcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttggaaaatttgttttggaaattcctccggctccggcaggtggtcctcagatt |
214 |
Q |
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| T |
11155744 |
tcatgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttggaaaatttgttttggaaattcctccggctccggcaggtgttcctcagatt |
11155645 |
T |
|
| Q |
215 |
aaaatcagcttccaaatcgatgatgatggcatcttagacgtttgtagcacggaaaagtcccttggagttaataagaaggttaaaataataagtgacaagg |
314 |
Q |
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| T |
11155644 |
aaaatcagcttccaaatcgatgatgatggcatcttagacgtttgtagcacggaaaagtcccttggagttaataagaaggttaaaataataagtgacaagg |
11155545 |
T |
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| Q |
315 |
gaaggttgtcaaaggaggatattaagaggaagatc |
349 |
Q |
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| T |
11155544 |
gaaggttgtcaaaggaggatattgagaggaagatc |
11155510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 11196291 - 11195957
Alignment:
| Q |
15 |
gggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgtattcaccacacatgttgacaaccaaatcaatattttaat |
114 |
Q |
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| T |
11196291 |
gggggattatggaaataataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
11196192 |
T |
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| Q |
115 |
tcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttggaaaatttgttttggaaattcctccggctccggcaggtggtcctcagatt |
214 |
Q |
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| T |
11196191 |
tgatgtttatgaaggtgagaggaaaataactagggacaacaacttgctaggaagatttgtgttggaaattcctcctgctgcggcaggtgttcctcagatc |
11196092 |
T |
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| Q |
215 |
aaaatcagcttccaaatcgatgatgatggcatcttagacgtttgtagcacggaaaagtcccttggagttaataagaaggttaaaataataagtgacaagg |
314 |
Q |
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| T |
11196091 |
ataatccgcttccaaatcgatgacgatggcatcttacacatctgtagcagggagaaattccttggagttaataataaggttaaaataataagtgataagg |
11195992 |
T |
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| Q |
315 |
gaaggttgtcaaaggaggatattaagaggaagatc |
349 |
Q |
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|||| |||||||||||||| ||| |||||| |||| |
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| T |
11195991 |
gaagattgtcaaaggaggaaattgagaggatgatc |
11195957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 11160706 - 11160566
Alignment:
| Q |
15 |
gggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgtattcaccacacatgttgacaaccaaatcaatattttaat |
114 |
Q |
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| T |
11160706 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccaaatgaatattctaat |
11160607 |
T |
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| Q |
115 |
tcatgtttatgaaggtgagaggaaaatagctagggaaaaca |
155 |
Q |
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| T |
11160606 |
tcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11160566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 11199287 - 11199147
Alignment:
| Q |
15 |
gggggattatggacataataatcccaaggaatacccacattcctaccgacatggaagatgtattcaccacacatgttgacaaccaaatcaatattttaat |
114 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||||| | |||||| || | |||||| ||||||||||||||||| | ||||||| || |||||| |||| |
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| T |
11199287 |
gggggattatgaacacaataatccctaggaataccaaaattcctgccaaaatggaacatgtattcaccacacatttgcacaaccacatgaatattctaat |
11199188 |
T |
|
| Q |
115 |
tcatgtttatgaaggtgagaggaaaatagctagggaaaaca |
155 |
Q |
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| T |
11199187 |
tcatgtttatgaaggtgagaggaaaataactagggaaaaca |
11199147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 11132524 - 11132375
Alignment:
| Q |
53 |
attcctaccgacatggaagatgtattcaccacacatgttgacaaccaaatcaatattttaattcatgtttatgaaggtgagaggaaaatagctagggaaa |
152 |
Q |
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| T |
11132524 |
attcctaccagcatggaacaagtattcacaacacatcttcataaccaaaccaatattttgattcatgtttacgagggtgaaagaaaaataactatgggga |
11132425 |
T |
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| Q |
153 |
acaacttgcttggaaaatttgttttggaaattcctccggctccggcaggt |
202 |
Q |
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| T |
11132424 |
acaacttgctaggaaaatttgttttggaaattcccccagctccggcaggt |
11132375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 11170025 - 11169976
Alignment:
| Q |
113 |
attcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgct |
162 |
Q |
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| T |
11170025 |
attcatgtttatgagggtgagaggcaaataactaaggacaacaacttgct |
11169976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 12527978 - 12527925
Alignment:
| Q |
112 |
aattcatgtttatgaaggtgagaggaaaatagctagggaaaacaacttgcttgg |
165 |
Q |
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| T |
12527978 |
aattcatgtttatgagggcgagagaatgatagctagcgaaaacaacttgcttgg |
12527925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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