View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19619_low_1 (Length: 712)

Name: NF19619_low_1
Description: NF19619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19619_low_1
NF19619_low_1
[»] chr5 (3 HSPs)
chr5 (16-695)||(40141079-40141759)
chr5 (236-275)||(28322259-28322298)
chr5 (236-283)||(15086716-15086763)
[»] chr1 (1 HSPs)
chr1 (236-277)||(3451873-3451914)
[»] chr7 (2 HSPs)
chr7 (236-311)||(46179876-46179951)
chr7 (236-283)||(10893863-10893910)
[»] chr4 (4 HSPs)
chr4 (236-270)||(2796564-2796598)
chr4 (229-299)||(13307888-13307957)
chr4 (238-282)||(20204669-20204714)
chr4 (246-283)||(50699198-50699235)
[»] chr6 (3 HSPs)
chr6 (241-281)||(24821696-24821736)
chr6 (238-277)||(4012740-4012779)
chr6 (236-269)||(32577472-32577505)
[»] chr3 (1 HSPs)
chr3 (236-277)||(49636826-49636867)
[»] chr2 (1 HSPs)
chr2 (236-277)||(35198231-35198272)


Alignment Details
Target: chr5 (Bit Score: 618; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 16 - 695
Target Start/End: Original strand, 40141079 - 40141759
Alignment:
Q  16 atgaagaaactgaagcatttgggcaacctgctactctccaagaaccggtagagcgtctacctttgattgacaatctgtcaaaaattcacatattgactct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141079 atgaagaaactgaagcatttgggcaacctgctactctccaagaaccggtagagcgtctacctttgattgacaatctgtcaaaaattcacatattgactct 40141178  T
Q  116 tttattagaatgaaacgagatctaatatctaatagtaccgtaaattgcaaagagcgacgaagcaaggcactgacacatagacaaactccggacacaacat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141179 tttattagaatgaaacgagatctaatatctaatagtaccgtaaattgcaaagagcgacgaagcaaggcactgacacatagacaaactccggacacaacat 40141278  T
Q  216 ggacatgagaaataatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacactagacaagccttgcat 315  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141279 ggacatgagaaatcatttttagaaaatgaattaattgaatttaaccacatgtgttggtgtcggacacccccacgtgtcagacactagacaagccttgcat 40141378  T
Q  316 caaaagtgtcaatgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactgacaccaggaacttccaccatgat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141379 caaaagtgtcaatgtgaaaataaaaaactgctgcttacttttgatcatcaacctccactcttatgtcattaacactgacaccaggaacttccaccatgat 40141478  T
Q  416 aacatatttactttctgattctgcaacatccattcttggtgaccactcgattcctgtaaag-nnnnnnnnngttacacaaataatatatttctaacaata 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  40141479 aacatatttactttctgattctgcaacatccattcttggtgaccactcgattcctgtaaagaaaaaaaaaagttacacaaataatatatttctaacaata 40141578  T
Q  515 attagctagatattatatattataacttgtagtaattaattttcaaagtgcaaaatgctaatcaccaattccagaatggtgtattcttttctcattattt 614  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40141579 attagctagttattatatattataacttgtagtaattaattttcaaagtgcaaaatgctaatcaccaatttcagaatggtgtattcttttctcattattt 40141678  T
Q  615 agctgttcttcttgtctaatctgttttcttggcctagcaaatgaaggtggctcaagtgaatcaaaatcatagccttgcatt 695  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40141679 agctgctctccttgtctaatctgtttgcttggcctagcaaatgaaggtggctcaagtgaatcaaaatcatagccttgcatt 40141759  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 28322259 - 28322298
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgt 275  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  28322259 agaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 15086716 - 15086763
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 283  Q
    ||||| ||||||| |||||  |||||||||||||||||||||||||||    
T  15086716 agaaagtgaattatttgaacgtaatcacatgtgttggtgtcggacacc 15086763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 3451873 - 3451914
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 277  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  3451873 agaaaacgaattaattgaatttaatcacatgtgttggtgtcg 3451914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 46179951 - 46179876
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacactagacaagcctt 311  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||| ||  |||| ||||  |||||||||| |||||    
T  46179951 agaaaataaattaattgaatataatcacatgtgtcggtgtcggaaacaaccacatgtccaacactagacatgcctt 46179876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 10893910 - 10893863
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacc 283  Q
    |||||||||  ||||||||| |||||||||||||||||||| ||||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtgttggtgtctgacacc 10893863  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 2796564 - 2796598
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgtt 270  Q
    |||||||||||||||||||||||||||||||||||    
T  2796564 agaaaatgaattaattgaatttaatcacatgtgtt 2796598  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 13307888 - 13307957
Alignment:
Q  229 aatttttagaaaatgaattaattgaatttaatcacatgtgttggtgtcggacacccccacgtgtcagacac 299  Q
    |||||| |||||||||  ||||| ||| |||||||| |||||||||||||||| |  ||||||||||||||    
T  13307888 aattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggaca-cgacacgtgtcagacac 13307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 20204714 - 20204669
Alignment:
Q  238 aaaatgaattaattgaatttaatcacatgtgt-tggtgtcggacac 282  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||    
T  20204714 aaaatgaattaattgaacgtaatcacatgtgtatggtgtcggacac 20204669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 50699198 - 50699235
Alignment:
Q  246 ttaattgaatttaatcacatgtgttggtgtcggacacc 283  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  50699198 ttaattgaatgtaatcacatgtgttggtgttggacacc 50699235  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 24821696 - 24821736
Alignment:
Q  241 atgaattaattgaatttaatcacatgtgttggtgtcggaca 281  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  24821696 atgaattaattgaatgtaatcacatgtgttggtgtctgaca 24821736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 4012740 - 4012779
Alignment:
Q  238 aaaatgaattaattgaatttaatcacatgtgttggtgtcg 277  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  4012740 aaaatgaattaattgaatataatcacatgtgtttgtgtcg 4012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 32577505 - 32577472
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgt 269  Q
    |||||||||||||||||||| |||||||||||||    
T  32577505 agaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 49636867 - 49636826
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 277  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  49636867 agaaaatgaattaattgaatgtaatcacatgcgctggtgtcg 49636826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 35198272 - 35198231
Alignment:
Q  236 agaaaatgaattaattgaatttaatcacatgtgttggtgtcg 277  Q
    |||||||||||||||||||| ||||||||||||  |||||||    
T  35198272 agaaaatgaattaattgaatgtaatcacatgtgacggtgtcg 35198231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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