View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19619_low_2 (Length: 466)
Name: NF19619_low_2
Description: NF19619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19619_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 48324663 - 48324231
Alignment:
| Q |
19 |
atcacattatcaaaacaaccaaacaaaattttcgatcaataaaaatagtttggaggattactcgaagattccaatggttacacatgatatgaacgatgat |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324663 |
atcacattatcaaaacaaccaaacaaaattttcaatcaatgaaaatagtttggaggattactcgaagattccaatggttacacatgatatgaacgatgat |
48324564 |
T |
|
| Q |
119 |
gaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324563 |
gaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtct |
48324464 |
T |
|
| Q |
219 |
tgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtga |
318 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
48324463 |
tgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaacggtttacaatga |
48324364 |
T |
|
| Q |
319 |
aagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaaagattctcttttccttgagactttgttatttttatgtctcacaa-aaaaca |
417 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
48324363 |
aagatctgtgtttcatggccgaagaatcccaagcaaggtacacattcaaagatcctctttttcttgagactttgttatttttatgtctcacaaaaaaaca |
48324264 |
T |
|
| Q |
418 |
tacaattgtagcggtatttgtcatgtttctgat |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
48324263 |
tacaattgtagcggtatttgtcatgtttctgat |
48324231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 359
Target Start/End: Complemental strand, 31269262 - 31268985
Alignment:
| Q |
82 |
gaagattccaatggttacacatgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacacca |
181 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || ||||| ||| | ||| ||||| ||||| |||||||||| ||||||| ||||| |||| |||| |
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| T |
31269262 |
gaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgattcataaacctccattcaaacaaatacca |
31269163 |
T |
|
| Q |
182 |
aagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattc |
281 |
Q |
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||| |||| |||||||||||||| ||||| | || || ||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
31269162 |
aaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtgggagaaattcttcaaaggaaatgaagggttgtattctatctacattc |
31269063 |
T |
|
| Q |
282 |
atccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtac |
359 |
Q |
| |
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|||||| ||| ||||||||| |||| ||||| | |||| || || |||||||||||||||||| |||||||||||| |
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| T |
31269062 |
atccaaatccttctttcaatgaaacggtttatgatcaaagctcagtctttcatggccgaagaatcccaagcaaggtac |
31268985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 382
Target Start/End: Complemental strand, 54479393 - 54479092
Alignment:
| Q |
82 |
gaagattccaatggttacacatgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacacca |
181 |
Q |
| |
|
||||||||| |||| || ||||| ||||| || |||||||||||| | ||| |||| ||| |||||||||| || |||| ||||| ||||||||| |
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| T |
54479393 |
gaagattcctatggctatgcatgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacacca |
54479294 |
T |
|
| Q |
182 |
aagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattc |
281 |
Q |
| |
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||| |||| |||||||| ||||||| |||||| || ||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||||| | |
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| T |
54479293 |
aaggttgcgtttatgttcttgacaataggtcctgttttgttggctccactttgggagaaattcttcaaaggaaatgaagggttatattctatctacatac |
54479194 |
T |
|
| Q |
282 |
atccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattc-aaagattctcttttc |
380 |
Q |
| |
|
|||| | ||| ||||||||| ||| ||||| | | |||| || |||||||||| ||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
54479193 |
atcctaatccttctttcaatgaaatggtttatactcaaagctcagtgtttcatgatcgaagaatcccaagcaaggtatcaattcaaaatattctcttttc |
54479094 |
T |
|
| Q |
381 |
ct |
382 |
Q |
| |
|
|| |
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|
| T |
54479093 |
ct |
54479092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 101 - 367
Target Start/End: Original strand, 1136152 - 1136418
Alignment:
| Q |
101 |
catgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttt |
200 |
Q |
| |
|
||||| |||||||| |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| | |
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| T |
1136152 |
catgacatgaacgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
1136251 |
T |
|
| Q |
201 |
tgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaa |
300 |
Q |
| |
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||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||| || || || ||||| |
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| T |
1136252 |
tgacaaaaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggttgtattcgatctacgttcatcctagcccttccttcaa |
1136351 |
T |
|
| Q |
301 |
tcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaa |
367 |
Q |
| |
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| |||| ||||| | | |||| | ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
1136352 |
tgaaaccgtttataatcaaagcttagtgtttcatggccgaagaatcccaagcaaggtatgcattcaa |
1136418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 1139363 - 1139620
Alignment:
| Q |
101 |
catgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttt |
200 |
Q |
| |
|
||||| ||||| || |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| | |
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|
| T |
1139363 |
catgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
1139462 |
T |
|
| Q |
201 |
tgacaaaaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaa |
300 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||| |||||||| |||||||| |||||| ||||||| |||||| ||||||| ||||| || ||||| |
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|
| T |
1139463 |
tgacaaaaggtcctattttgttggctccgctttgggagaaattctttaaaggaaacgaagggttgtattcgatctacgttcatcctagtccttccttcaa |
1139562 |
T |
|
| Q |
301 |
tcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggta |
358 |
Q |
| |
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| |||| ||||| | | |||| || |||||| |||||||||||||| ||||||||||| |
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|
| T |
1139563 |
tgaaacagtttataatcaaagctcagtgttttatggccgaagaatcccaagcaaggta |
1139620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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