View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19619_low_6 (Length: 261)
Name: NF19619_low_6
Description: NF19619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19619_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 18220654 - 18220518
Alignment:
| Q |
113 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
212 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
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| Q |
213 |
agatcagaagcacgaaagtatattggtgacacaggtt |
249 |
Q |
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| T |
18220554 |
agatcagaagcacgaaagtatattggtgacacaggtt |
18220518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 18220749 - 18220719
Alignment:
| Q |
18 |
tttttcagtacacagttcagttttccacttg |
48 |
Q |
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| T |
18220749 |
tttttcagtacacagttcagttttccacttg |
18220719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 43012431 - 43012294
Alignment:
| Q |
112 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
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| Q |
212 |
gagatcagaagcacgaaagtatattggtgacacaggtt |
249 |
Q |
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| T |
43012331 |
tagatcagaagcaagaaagtatattggtgacacaggtt |
43012294 |
T |
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