View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_high_2 (Length: 490)
Name: NF1961_high_2
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 16 - 475
Target Start/End: Original strand, 43575460 - 43575919
Alignment:
| Q |
16 |
aaagggagaaaatcttcttgtagcaccagaaaaggcttttcaaagattgaaaagtgattacaatgatgcattagcgatgacaaatatgagagctggaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
43575460 |
aaagggagaaaatcttcttgtagcaccagaaaaggcttttcaaagattgaaaagtgattaatatgatgcattagcgatgacaaatatgagagcttgaaat |
43575559 |
T |
|
| Q |
116 |
ctgataataaattaggctgctgaaatcgtagaagaatggtagtttgataatttgactggtaagttaactacttatacattttgttgataatatcaaatgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43575560 |
ctgataataaattaggctgctgaaatcgtagaagaatggtagtttgataatttgactggtaagttaactaattatacattttgttgataatatcaaatgc |
43575659 |
T |
|
| Q |
216 |
ttgtatcttaattcattttgggtataccatcttaaaacgttactttgaacctaacttattcatgtcaaggtagatatgtactatacacacaaacacacgt |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43575660 |
ttgtatcttaattcattttgggtataccttcttaaaacgttactttgaacctaacttattcatgtcaaggtagatatgtactatacatacaaacacacgt |
43575759 |
T |
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| Q |
316 |
agaatgtgtgtgcatatataattagcaattgcttgtaattttttctattttgtgtgataactctaccatggcatacttttcaaatatgaaaaagatgaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43575760 |
agaatgtgtgtgcatatataattagcaattgcttgtaattttttctattttgtgtgataactctaccatggcatacttttcaaatatgaaaaagatgaat |
43575859 |
T |
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| Q |
416 |
tagatactataataattagaaaatatatttttcatatatatcattaaggttagatattat |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43575860 |
tagatactataataattagaaaatatatttttcatatatatcattaaggttagatattat |
43575919 |
T |
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