View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_high_3 (Length: 455)
Name: NF1961_high_3
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 41062811 - 41062383
Alignment:
| Q |
18 |
aatagaagatcatgcaagggaccttcttgcagccaccgatgagatgcaaagagcaaattacttcacatttgtaatgttaatgaaaatgtctccacctgac |
117 |
Q |
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| T |
41062811 |
aatagaagatcatgcaagggaccttcttgcagccaccgatgagatgcaaagagcaaattacttcacatttgtaatgttaatcaaaatgtctccacctgac |
41062712 |
T |
|
| Q |
118 |
acaagactcgaaggaaacgtgacattcttaatgccaaatgatcgaatgctcgcaaatgtgacgcttcaagaagaatctgtttctgaattcttgttaagac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41062711 |
acaagactcgaaggaaacgtgacattcttaatgccaaatgatcgaatgctcgcaaatgtgacgcttcaagaagaatctgtttctaaattcttgttaagac |
41062612 |
T |
|
| Q |
218 |
attcaattccatcacctctactctttgacaccttgaaacaatttcccagtggcacaaccgttcctagtttattgccaaattgcatgatgagaatatctaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41062611 |
attcaattccatcacctctactctttgacaccttgaaacaatttcctagtggcacaaccgttcctagtttattgccaaattgcataatgagaatatctaa |
41062512 |
T |
|
| Q |
318 |
caatggtaggaagaattttgttgtcaacaatgtaaagattattagcccaaacatatgtgtgtctggatcttcaattcgatgtcatggtatagatggggtc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41062511 |
caatggtaggaagaattttgttgtcaacaatgtaaagattattagcccaaacatatgtgtgtctggatcttcaattcgatgtcatggtatagatggggtc |
41062412 |
T |
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| Q |
418 |
ctgtcacaaacatgtacattagagaataa |
446 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41062411 |
ttgtcacaaacatgtacattagagaataa |
41062383 |
T |
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