View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1961_high_4 (Length: 449)
Name: NF1961_high_4
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 35684653 - 35685070
Alignment:
| Q |
18 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35684653 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgtgcatggacatcaaacc |
35684752 |
T |
|
| Q |
118 |
ttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35684753 |
ttttcaacactttgtcatgaggcccttatgcatgctagaatcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaa |
35684852 |
T |
|
| Q |
218 |
gtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcggg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35684853 |
gtatacacatgaacaaggttttgcagtttaccttggcagatgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcggg |
35684952 |
T |
|
| Q |
318 |
tttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35684953 |
tttggcgccggagaaggtttttgtaatacctaatgctgttgacactgccaagtttaagccaatgtcggaggaggagcgccgtagttctaaacctagtaga |
35685052 |
T |
|
| Q |
418 |
tccgaaattgttattgtt |
435 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35685053 |
tccgaaattgttattgtt |
35685070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 58 - 359
Target Start/End: Complemental strand, 40672449 - 40672148
Alignment:
| Q |
58 |
ccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaaccttttcaacactttgtcatgaggcccttatgcatgctagaa |
157 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||| || | ||||||||| ||| ||||||| ||| |||||||||| | || |||||||| |||| |
|
|
| T |
40672449 |
ccaattataagaacgattcttattcgagaaagaattacagtggtgcatggacaccaagccttttcgacattttgtcatgaaactctcatgcatgcaagaa |
40672350 |
T |
|
| Q |
158 |
tcatgggatacaaggttgtgtttaccgatcattccttgaatggttttagtgatgctggaagtatacacatgaacaaggttttgcagtttaccttggcaga |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || | |||||| |||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
40672349 |
ccatgggatacaaggttgtgtttacagatcattctctgtacggttttgctgatgctggaagcattcacatgaacaaggtgttgcagtttaccttggcaga |
40672250 |
T |
|
| Q |
258 |
tgtgagtcaggctatatgtgtttctcatacaagtaaggagaacacggttttgaggtcgggtttggcgccggagaaggtttttgtaatacctaatgctgtt |
357 |
Q |
| |
|
||||| ||| || |||||||||||||| ||||| ||||| ||||| || || |||| |||||| | || || || |||||||||||||||||||| ||| |
|
|
| T |
40672249 |
tgtgactcaagccatatgtgtttctcacacaagcaaggaaaacacagtgttacggtcaggtttgccaccagataaagtttttgtaatacctaatgccgtt |
40672150 |
T |
|
| Q |
358 |
ga |
359 |
Q |
| |
|
|| |
|
|
| T |
40672149 |
ga |
40672148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 20685487 - 20685601
Alignment:
| Q |
18 |
ctttaatcagaacacatttccaactttgcatggaacactcccaattataagaactattctcactcgagaaagaattaccgttgcgcatggacatcaaacc |
117 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20685487 |
ctttaatatgaatacatttccaactttatatggaacactcccaattataagaactattttcactcgagaaagaattaccgttgtgcatggacatcaaacc |
20685586 |
T |
|
| Q |
118 |
ttttcaacactttgt |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20685587 |
ttttcaacactttgt |
20685601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University