View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_1 (Length: 910)
Name: NF1961_low_1
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 274 - 892
Target Start/End: Complemental strand, 7637627 - 7636995
Alignment:
| Q |
274 |
atattatcaagcacaaatcattttttaaaactatttattcaaaattcannnnnnnaaccacaaatcatggtttttgtgattccacaataagatgcgtta- |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7637627 |
atattatcaagcacaaatcattttttaaaactatttattcaaaattcatttttttaaccacaaatcatggtttttgtgattccacaataagatgcgttaa |
7637528 |
T |
|
| Q |
373 |
------------gatatacgtgattccataaatattaatatataagatgttgaatttatcttgatggaaatttgcaaaatatcaacttttgcatactttt |
460 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7637527 |
aatgtgttaaaagatatacgtgatttcatagatattaatatataagatgttgaatttgtcttgatggaaatttgcaaaatatcaacttttgcatactttt |
7637428 |
T |
|
| Q |
461 |
actaatgaataataaatgttaaaattgtacatttacctgaatgaaacagtcaatgg-tatcggtcaatgtggttgtcgaatatccacatagcttagctca |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7637427 |
gctaatgaataataaatgttaaaattgtacatttacctgaatgaaacagtcaatgggtatcggtcaatgtggttgtcgaatatccacatagcttagctca |
7637328 |
T |
|
| Q |
560 |
ccggacgcaactcttgattgatgtgtctcgggttgcaggttcaaatttacttgatgagattcgaagatgtttttcttttacataaaacacctcattttca |
659 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7637327 |
ccggacgcaactcttgattgatgtgtctcgggttgcaagttcaaatttaattgatgagattcgaagatgtttttcttttacataaaacacctcattttca |
7637228 |
T |
|
| Q |
660 |
tatttgttttaagcctccgaataagttgcgttgattttgactaacactattaattttgaatatacaaatgtaatttgtaagatttcatcacggggtttct |
759 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7637227 |
tatttgttttaagcctcggaataagttgcgttgattttgactaacactattaattttgaatatacaaatgtaatttgtaagatttcatcatggggtttct |
7637128 |
T |
|
| Q |
760 |
tgtgcttctttctctcttgccaatcttaattctattcattatacacatctacaaaataaggagtactagtagagcatcatcaactccaccaggtccaaaa |
859 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7637127 |
tgtgcttctttctctcttgccaatcttaattctattcattatacacatctacaaaataaggagtactagtagagcatcatcaactccaccaggtccaaaa |
7637028 |
T |
|
| Q |
860 |
ccacttcctctaattggaaatctacaccagctt |
892 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
7637027 |
ccacttcctctaattggaaatctacaccagctt |
7636995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 7638903 - 7638639
Alignment:
| Q |
1 |
attgtgtgaaagagacattaacgttagtttaacgttgcaggttacgttacgttagataatatattatacacgcacaattgcatttagatttttgtgtgtt |
100 |
Q |
| |
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| T |
7638903 |
attgtgtgaaagagacattaacgttagtttaacgttgcaggttacgttacgttagata------------cgcacaattgcatttagatttttgtgtgtt |
7638816 |
T |
|
| Q |
101 |
gtggaatgattctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatagggcaaaatcttcatggtaaataaaattgattt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
7638815 |
gtggaatgattctgacataaaaaacaaagttcaatagattcgaaaacactttgtgtttgaatgaatatggcaatatcttcatggtaaataaaattgattt |
7638716 |
T |
|
| Q |
201 |
tgtaataggtagaatttaaaactattattaattgttgaatttaatttaataaaatcattaatcgacttttaaaatat |
277 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7638715 |
tgtaataggtagaatttaaaactattattaattgttgaatttaatttaataaaatcattaatcgacttttaaaatat |
7638639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 757 - 892
Target Start/End: Complemental strand, 7624038 - 7623903
Alignment:
| Q |
757 |
tcttgtgcttctttctctcttgccaatcttaattctattcattatacacatctacaaaataaggagtactagtagagcatcatcaactccaccaggtcca |
856 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||||| |
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| T |
7624038 |
tcttgtgcttctttctctcttgccaatcttaattctattcattatacacatccacaaaataaagaatactagaagagcatcatcaactccaccaggtcca |
7623939 |
T |
|
| Q |
857 |
aaaccacttcctctaattggaaatctacaccagctt |
892 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
7623938 |
aaaccacttcctctaattggaaatttacaccagctt |
7623903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 641 - 888
Target Start/End: Complemental strand, 7630471 - 7630216
Alignment:
| Q |
641 |
ataaaacacctcattttcatatttgttttaagcctccgaataagttgcgttgattttgactaacac--tattaattttgaatatacaaatgta------a |
732 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||| |||| |||| | | | | ||||||||| ||||||||||||| |||||||| || | |
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| T |
7630471 |
ataaaatacctcattttcatgttcgttttaagcctctaaatacgttgtgcttactatgactaacatattattaattttgaagatacaaatatatatccaa |
7630372 |
T |
|
| Q |
733 |
tttgtaagatttcatcacggggtttcttgtgcttctttctctcttgccaatcttaattctattcattatacacatctacaaaataaggagtactagtaga |
832 |
Q |
| |
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|||||||| |||||||| || |||| | ||| ||| ||| || |||||| | ||| |||| ||||| ||||| |||||| || ||||||||| ||| |
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| T |
7630371 |
tttgtaaggtttcatcatggaagttctattccttgtttatctattaccaatccttattatattaattatccacatacacaaaacaaagagtactagaaga |
7630272 |
T |
|
| Q |
833 |
gcatcatcaactccaccaggtccaaaaccacttcctctaattggaaatctacacca |
888 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7630271 |
gcatcatcaactccaccaggtccaaaaccatttcctctaattggaaatctacacca |
7630216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 7632028 - 7631889
Alignment:
| Q |
63 |
attatacacgcacaattgcatttagatttttgtgtgttgtggaatgattctgacataaaaaacaaagttcaatagattcgaaaacact--ttgtgtttga |
160 |
Q |
| |
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||||||||| ||| ||| |||||||||||||||| ||| | |||||||| |||| |||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
7632028 |
attatacactcacgattacatttagatttttgtgcgttataaaatgattccgacagaaaaaacaaagttcaatagacttgaaaacacttcttgtgtttga |
7631929 |
T |
|
| Q |
161 |
atgaatagggcaaaatcttcatggtaaataaaattgattttg |
202 |
Q |
| |
|
|| ||| ||||||||||| || |||||||||||||||||| |
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|
| T |
7631928 |
ataaat--ggcaaaatcttattgataaataaaattgattttg |
7631889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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