View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_11 (Length: 338)
Name: NF1961_low_11
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 36 - 322
Target Start/End: Complemental strand, 16173060 - 16172774
Alignment:
| Q |
36 |
ataagagagtgtgtgtcagagagtgttagaaagagcgtgtccatagcatttctcttaatatatggttacttatacgaagaggagtgtgtaaactttaaca |
135 |
Q |
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| T |
16173060 |
ataagagagtgtgtgtcagagagtgttagaaagagcgtgtccatagcatttctcttaatatatggttacttatacgaagaggagtgtgtagactttaaca |
16172961 |
T |
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| Q |
136 |
tataagaggagatgaaagtctaattcaaacatctctttaagaaagtgtaattaaccttattattatattagtatcttaagctttagattagctatttctc |
235 |
Q |
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| T |
16172960 |
tagaagaggagatgaaagtctaattcaaacatctctttaagaaagtgtaatttaccttattattatattagtatcttaagctttagattagctatttctc |
16172861 |
T |
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| Q |
236 |
taagaaatatgctcatgcatannnnnnngaaatatgttcttaccatgacaactttatattagtagaagaggagaggaacattgttat |
322 |
Q |
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| T |
16172860 |
taagaaatatgctcatgcatatttttttgaactatgttcttaccatgacaactttatattagtagaagaggagaggaacattgttat |
16172774 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 7709798 - 7709751
Alignment:
| Q |
36 |
ataagagagtgtgtgtcagagagtgttagaaagagcgtgtccatagca |
83 |
Q |
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| T |
7709798 |
ataaaagagtgagtgttagagagtgttagaaagagagtgtccatagca |
7709751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 54187077 - 54187115
Alignment:
| Q |
53 |
agagagtgttagaaagagcgtgtccatagcatttctctt |
91 |
Q |
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| T |
54187077 |
agagagtgttagaaagagagtgtccatagcacttctctt |
54187115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 557516 - 557549
Alignment:
| Q |
56 |
gagtgttagaaagagcgtgtccatagcatttctc |
89 |
Q |
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| T |
557516 |
gagtgttagaaagagagtgtccatagcatttctc |
557549 |
T |
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