View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_12 (Length: 319)
Name: NF1961_low_12
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 314
Target Start/End: Original strand, 20545453 - 20545733
Alignment:
| Q |
34 |
ttttgtggggtcgaattagacctgagttaaattctgagatttttcatgttggttagaacatggttattacaaatattagaacatggtaacttatacattt |
133 |
Q |
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| T |
20545453 |
ttttgtggggtcgaattagacctgagttaaattctgagatttttcatgttggttagaacatggttattacaaatattagaacatggtaacttatacattt |
20545552 |
T |
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| Q |
134 |
cagagatgctattcatatcaattacaaactttgacttaggatgtttgagatatatatgagttttaagttctgtattagctcattgaaatttgttttcctc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20545553 |
cagagatgctattcatatcaattacaaactttgacttaggatgtttgagatatatatgagttttaagttctgtattagctcattgaaatttgttttcctc |
20545652 |
T |
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| Q |
234 |
tctaaagttttatataaactacaagtttgaaattctaggatatatctctgaggtctatgttttatttatgtttgtcctatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20545653 |
tctaaagttttatataaactacaagtttgaaattctaggatatatctctgaggtctatgttttatttatgtttgacctatg |
20545733 |
T |
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