View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_17 (Length: 253)
Name: NF1961_low_17
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 31231089 - 31230858
Alignment:
| Q |
18 |
agtatagctgtagcttttagttcttttagagtaattctccattaatgaacaaccccaaaagttgttcat-acatccttagtaacttggtcatttctaaac |
116 |
Q |
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| T |
31231089 |
agtatagctgtagcttttggttcttttagagtaattctccattaatgaacaaccccaaaagttgttcattacatccttagtaacttggtcatttctaaac |
31230990 |
T |
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| Q |
117 |
tattatatgttcagtagatttggggttgttaccaggtggagatgttggcttctaggcatgtttagtcttggtgttcttgtgaatgagagtcctaatgata |
216 |
Q |
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| T |
31230989 |
tattatatgttcagtagatttggggttgttaccaggtggagatgttggcttctaggcatgtttagtcttggtgttcttgtgaatgagagtccta-----a |
31230895 |
T |
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| Q |
217 |
aagtggatatttgttgggagcttgagtggtttgatga |
253 |
Q |
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| T |
31230894 |
aagttgatatttgttgggagcttgagtggtttgatga |
31230858 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 5411579 - 5411613
Alignment:
| Q |
52 |
ttctccattaatgaacaaccccaaaagttgttcat |
86 |
Q |
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| T |
5411579 |
ttctccattaatgaacaaccccaaaagttgttcat |
5411613 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 22620732 - 22620682
Alignment:
| Q |
40 |
cttttagagtaattctcc---attaatgaacaaccccaaaagttgttcata |
87 |
Q |
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| T |
22620732 |
cttttaaagtaattctcctctattaatgaacaaccccaaaagttgttcata |
22620682 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 33293661 - 33293729
Alignment:
| Q |
21 |
atagctgtagcttttagttcttttagagtaattctcc---attaatgaacaaccccaaaagttgttcata |
87 |
Q |
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| T |
33293661 |
atagttgtagcttttagtccttt-agagtaattctcctccattaatgaacaacacaaaaagttgttcata |
33293729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 24899566 - 24899629
Alignment:
| Q |
28 |
tagcttttagtt-cttttagagtaatt---ctccattaatgaacaaccccaaaagttgttcata |
87 |
Q |
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| T |
24899566 |
tagcttttagtcacttttagagtaattttcctccattaatgaacaatctcaaaagttgttcata |
24899629 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 1236078 - 1236042
Alignment:
| Q |
54 |
ctccattaatgaacaaccccaaaagttgttcatacat |
90 |
Q |
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| T |
1236078 |
ctccgttaatgaacaaccccaaaagttgtacatacat |
1236042 |
T |
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