View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1961_low_2 (Length: 702)
Name: NF1961_low_2
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_2 |
 | |
|
| [»] scaffold0426 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0426 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 11 - 702
Target Start/End: Complemental strand, 880 - 187
Alignment:
| Q |
11 |
tgaagtagagtaagtcggtgcactgaatataaacaaaataatcattgaaatagaagtacacaacatcattaacagctgctatctagcagtaaagaaaggg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
880 |
tgaagtagagtaagtcggtgcactgaatataaacaaaataatcattaaaatagaagtacacaacatcattaacagctgctatctagcagtaaagaaagag |
781 |
T |
|
| Q |
111 |
acacagacgcaagactatgaagatcacacttgctgcaagcatctaaaaccaaattaactgatgctcgatacaaggagtcccgaatatttgtaggttcaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780 |
acacagacgcaagactatgaagatcacacttgctgcaagcatctaaaaccaaattaactgatgctcgatacaaggagtcccgaatatttgtaggttcaac |
681 |
T |
|
| Q |
211 |
agacacttgcacaccagaatttctgcataattgacgtaattgttcatgtcacagccaaaaatcattcatgtcagtacaatttacaatttagtatatcata |
310 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
680 |
agacacatgcacaccagaatttctgcataattgacgtaattgttcatgtcacagccaaaaatcattcatgtcagtacaatttacaatttagtatatcata |
581 |
T |
|
| Q |
311 |
gttcacagtataaaagtgtttgttcattttactttattagaagtgtcgctgattgcttgaacagatcaatttatgcactgccaaaattcaagatatgtat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
580 |
gttcacagtataaaagtgtttgttcattttattttattagaagtgtcgctgattgcttgaacagatcaatttatgcactgccaaaattcaagatatgtat |
481 |
T |
|
| Q |
411 |
tattgcaaacagcatattgaacaagatagc-agagatcc-aaaaaaagtcccaacaaagggtaaagataacagcaaaatttcggaatnnnnnnnnngtgg |
508 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
480 |
tattgcaaacagcatattgaaccagatagcaagagatccaaaaaaaagtcccaacaaagggtaaagataacagtaaaatttcggaataaaaaaaaagtgg |
381 |
T |
|
| Q |
509 |
tacccttgtatcatatacaaacttatatcattctgtgaagtcaactctgttaaaatacatcttatatttatttcgtttaaaatttaggctccaaaacctc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
380 |
tacccttgtatcatatacaaacttatatcattctatgaagtcaactatgttaaaatacatcttatatttatttcgtttaaaattcaggctccaaaacctc |
281 |
T |
|
| Q |
609 |
attttcgtccttaaaattgtaggatgttgtcaagttagtccctaaaattaagaaattgacaaaaatatgcctaaaatcgaaaattgtccgtcat |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
280 |
attttcgtccttaaaattgtaggatgttgtcaagttagtccctaaaattaagaaattgacaaaaatatgcctaaaatcgaaaatactccgtcat |
187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 52726292 - 52726015
Alignment:
| Q |
10 |
ctgaagtagagtaagtcggtgcactgaatataaacaaaataatcattgaaatagaagtacacaacatcattaacagctgctatctagcagtaaagaaagg |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||| ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
52726292 |
ctgaagtagagtaagtcggtgcactaaatataaacaaaataatcattaaaacagaagtatacagcatgattaacagctgctacctagcagtaaagaaagg |
52726193 |
T |
|
| Q |
110 |
gacacagacgcaagactatgaagatcacacttgctgcaagcatctaaaaccaaattaactgatgctcgatacaaggagtcccgaatatttgtaggttcaa |
209 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52726192 |
gacacagacgcaggactacgaagatcacacctgctgcaagcatctaaaacaaaattaactgatgctcgatacaaggattcccgaatatttgtaggttcaa |
52726093 |
T |
|
| Q |
210 |
cagacacttgcacaccagaatttctgcataattgacgtaattgttcatgt-cacagccaaaaatcattcatgtcagta |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
52726092 |
cagacacttgcacaccagaatttctgcataattgacgtaactgttcatgtgcacagccaaaaaacattcacgtcagta |
52726015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 541 - 702
Target Start/End: Complemental strand, 13725066 - 13724905
Alignment:
| Q |
541 |
ctgtgaagtcaactctgttaaaatacatcttatatttatttcgtttaaaatttaggctccaaaacctcattttcgtccttaaaattgtaggatgttgtca |
640 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||| || || ||||||||||||||||||| |
|
|
| T |
13725066 |
ctgtgaactcaactctgttaaaatacatcttatatttatttcgtttaaaattcagactctgaaacctcatattcatctttgaaattgtaggatgttgtca |
13724967 |
T |
|
| Q |
641 |
agttagtccctaaaattaagaaattgacaaaaatatgcctaaaatcgaaaattgtccgtcat |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| || | | |||||||| ||||| |
|
|
| T |
13724966 |
agttagtccctaaaattaagaaattgacaaaaatatccctgaagttgtaaattgtcggtcat |
13724905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 13725235 - 13725152
Alignment:
| Q |
359 |
ctgattgcttgaacagatcaatttatgcactgccaaaattcaagatatgtattattgcaaacagcatattgaacaagatagcaga |
443 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
13725235 |
ctgattgcttgaacagatcagtgtatgctctgccaaaattcaagat-tgtagtattacaaacagcatattgaagaagatagcaga |
13725152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 653
Target Start/End: Complemental strand, 7969386 - 7969335
Alignment:
| Q |
602 |
aaacctcattttcgtccttaaaattgtaggatgttgtcaagttagtccctaa |
653 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
7969386 |
aaacctcattttggtccttataattgtcggatgttgtcatgtttgtccctaa |
7969335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University