View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_5 (Length: 452)
Name: NF1961_low_5
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 202 - 427
Target Start/End: Original strand, 52868494 - 52868725
Alignment:
| Q |
202 |
aaatggttcttctagttctaatctgcgtatgaatgccaattgagagagagcacctgcaattgcaat------cacaatcacaaattgaatcgattccaag |
295 |
Q |
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| T |
52868494 |
aaatggttcttctagttctaatctgcgtatgaatgccaattgagagagagcacctgcaattgcaatcacaatcacaatcacaaattgaatcgattcgaag |
52868593 |
T |
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| Q |
296 |
aagaagaaataaaattacataccaataatcattccgattgtgacgaaagtgagaagtccgaacacaatcttcatcgccggatcactcatcgattcgattc |
395 |
Q |
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| T |
52868594 |
aagaagaaataaaattacataccaataatcattccgattgtgacgaaagtgagaagtccgaacacaatcttcatcgccggaggactcatcgattcgattc |
52868693 |
T |
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| Q |
396 |
attcactcaaatccagtcagtcaatctctttc |
427 |
Q |
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| T |
52868694 |
attcactcaaatccagtcagtcaatctctttc |
52868725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 52868315 - 52868470
Alignment:
| Q |
17 |
ctaagataatcgcattcctcgtagctgaggaaattatgaagtaaaataattcgtggagaccaactaaggacttcaggtttgacatatccgaggcgtaaga |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52868315 |
ctaagataatcgcattcctcgtagctgaggaagttatgaagtaaaataattcgtggagaccaactaaggacttcaggtttgacatatccaaggcgtaaga |
52868414 |
T |
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| Q |
117 |
tttgtgcttctttgtc---attattattccaataagtataacctctggggagtagt |
169 |
Q |
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| T |
52868415 |
tttgtgcttctttgtcattattattattccaataagtataacctctggggagtagt |
52868470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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