View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1961_low_7 (Length: 430)

Name: NF1961_low_7
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1961_low_7
NF1961_low_7
[»] chr5 (7 HSPs)
chr5 (23-251)||(39121726-39121956)
chr5 (279-407)||(3623465-3623594)
chr5 (149-243)||(14393983-14394077)
chr5 (149-251)||(20983543-20983645)
chr5 (149-243)||(25672272-25672366)
chr5 (157-248)||(20983842-20983933)
chr5 (157-251)||(14394344-14394438)
[»] chr7 (11 HSPs)
chr7 (17-251)||(31166840-31167076)
chr7 (17-239)||(21971546-21971770)
chr7 (148-230)||(27596002-27596083)
chr7 (137-254)||(28750927-28751045)
chr7 (18-147)||(27596384-27596513)
chr7 (149-250)||(38916406-38916507)
chr7 (157-250)||(21972092-21972184)
chr7 (139-252)||(15577468-15577578)
chr7 (157-250)||(38916045-38916138)
chr7 (149-239)||(27230474-27230564)
chr7 (149-243)||(32741801-32741895)
[»] chr2 (9 HSPs)
chr2 (17-251)||(39865184-39865420)
chr2 (19-251)||(29770766-29771000)
chr2 (18-250)||(4329599-4329834)
chr2 (157-248)||(4330136-4330226)
chr2 (149-263)||(30674443-30674557)
chr2 (149-250)||(9074598-9074699)
chr2 (157-219)||(29771299-29771360)
chr2 (149-239)||(9914204-9914294)
chr2 (157-251)||(39864768-39864860)
[»] chr8 (6 HSPs)
chr8 (17-247)||(26759207-26759439)
chr8 (67-242)||(146644-146822)
chr8 (149-254)||(308301-308406)
chr8 (149-243)||(186682-186776)
chr8 (160-251)||(187049-187140)
chr8 (157-219)||(147190-147251)
[»] chr3 (10 HSPs)
chr3 (17-251)||(23566775-23567011)
chr3 (17-249)||(39737610-39737844)
chr3 (279-427)||(45395411-45395560)
chr3 (150-248)||(785785-785883)
chr3 (137-222)||(30385749-30385836)
chr3 (157-219)||(39737232-39737293)
chr3 (157-249)||(23566432-23566522)
chr3 (149-221)||(53153869-53153941)
chr3 (329-395)||(50470355-50470421)
chr3 (157-230)||(53153517-53153590)
[»] chr4 (14 HSPs)
chr4 (18-251)||(12639608-12639843)
chr4 (131-278)||(38147357-38147513)
chr4 (80-243)||(28103806-28103972)
chr4 (155-244)||(917683-917772)
chr4 (149-251)||(43012754-43012856)
chr4 (18-98)||(918696-918776)
chr4 (149-222)||(23643431-23643504)
chr4 (157-222)||(12639208-12639273)
chr4 (157-219)||(28104360-28104421)
chr4 (157-219)||(919115-919176)
chr4 (149-251)||(54714887-54714989)
chr4 (157-251)||(43013130-43013224)
chr4 (183-251)||(12629834-12629902)
chr4 (183-244)||(25163430-25163491)
[»] scaffold0064 (1 HSPs)
scaffold0064 (278-427)||(19902-20052)
[»] chr6 (7 HSPs)
chr6 (279-427)||(17922842-17922991)
chr6 (149-249)||(8700890-8700990)
chr6 (149-222)||(12307315-12307388)
chr6 (162-244)||(604984-605066)
chr6 (149-222)||(7727395-7727468)
chr6 (157-251)||(12306970-12307064)
chr6 (157-251)||(8701263-8701357)
[»] chr1 (2 HSPs)
chr1 (149-243)||(40888792-40888886)
chr1 (183-251)||(23269946-23270014)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 39121726 - 39121956
Alignment:
Q  23 tagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgtgccttt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  39121726 tagtactgatgatggcagagagatgatagatagcagtcatacggttgtgtaaacagatggaatggaaatgacgcgtctctataataatggttgtgccttt 39121825  T
Q  123 gaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttat 220  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  |||||||||     
T  39121826 gaatatcgaaagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaa 39121925  T
Q  221 tgactatttactgttccttatccagtgcccc 251  Q
    | |||||||| ||||||||||||||||||||    
T  39121926 ttactatttattgttccttatccagtgcccc 39121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 407
Target Start/End: Complemental strand, 3623594 - 3623465
Alignment:
Q  279 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 378  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  379 caccccatgttttcc-ttccaccgcttgat 407  Q
    |||||||| |||||| ||||| ||||||||    
T  3623494 caccccatattttcctttccatcgcttgat 3623465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 14394077 - 14393983
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    |||||||  ||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||||| ||||||||||||    
T  14394077 tttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgttccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 20983645 - 20983543
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||    
T  20983645 tttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttttcttatccagtgc 20983546  T
Q  249 ccc 251  Q
    |||    
T  20983545 ccc 20983543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 25672366 - 25672272
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    ||||||| |||||||||||||| |||| ||||||||||||| | || ||  |||||||||| ||||||||||||  |||| | ||||||||||||    
T  25672366 tttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgttccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 20983842 - 20983933
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || ||||||||||||    
T  20983842 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgc 20983933  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 14394344 - 14394438
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||||||  |||||||||||| ||||||| | || ||||| |||||||||    
T  14394344 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttattcagtgcccc 14394438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 31166840 - 31167076
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgt 116  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  31166840 agaatttagtactgatgatgacagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgt 31166939  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||    
T  31166940 gcctttgaatattgaaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcattt 31167039  T
Q  215 atttattgactatttactgttccttatccagtgcccc 251  Q
    ||||| | |||||||| ||||||||||||||||||||    
T  31167040 atttaattactatttattgttccttatccagtgcccc 31167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 21971770 - 21971546
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagca-gtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttg 115  Q
    |||||||| ||||||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||||||||| ||||||||  |||||||||||||    
T  21971770 agaatataatactgatgatggcagagagataatagatagcaagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctgcataataatggttg 21971671  T
Q  116 tgcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatt 213  Q
    |||||||||||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||    
T  21971670 tgcctttgaatattaaaaaagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagatc-att 21971572  T
Q  214 tatttattgactatttactgttcctt 239  Q
    |||||| | | |||||| ||||||||    
T  21971571 tatttaattattatttattgttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 27596083 - 27596002
Alignment:
Q  148 ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 230  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27596083 ttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctattta 27596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 28750927 - 28751045
Alignment:
Q  137 tattgaatatat-tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgtt 235  Q
    |||||||||||  ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| ||||    
T  28750927 tattgaatatacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgtt 28751026  T
Q  236 ccttatccagtgcccctgg 254  Q
    |||||||||||||||||||    
T  28751027 ccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 27596513 - 27596384
Alignment:
Q  18 gaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgtg 117  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||| | || |||||| |||||||||| |||   ||||| | ||||||||| || |||    
T  27596513 gaatatagtactgatgatgacagagagataatagataacagtcatatggttatgtaaacagatggaatgaaaaaggcgcgtttgtataataatagtcgtg 27596414  T
Q  118 cctttgaatattgaaagagtattgaatata 147  Q
    |||||||  |||||||||||||||||||||    
T  27596413 cctttgagaattgaaagagtattgaatata 27596384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 38916406 - 38916507
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||| |||||||||||| ||||||| ||||| |||||||||||    
T  38916406 tttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgttctttatccagtgc 38916505  T
Q  249 cc 250  Q
    ||    
T  38916506 cc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 21972092 - 21972184
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 250  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||  ||||||||| ||  | || | |||||||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgccc 21972184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 15577578 - 15577468
Alignment:
Q  139 ttgaatatat--tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttc 236  Q
    ||||||||||  ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| ||||     ||| ||||||| |||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt-----ttgtctatttattgttc 15577484  T
Q  237 cttatccagtgcccct 252  Q
    ||||||||||||||||    
T  15577483 cttatccagtgcccct 15577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 38916138 - 38916045
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 250  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||    
T  38916138 ttttaattagttgacttatatctcactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatccagtgccc 38916045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 27230564 - 27230474
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttcctt 239  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||  |||||||||||| ||||| | ||||||||    
T  27230564 tttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattgttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 32741801 - 32741895
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    ||||||| |||||| ||||||| |||| ||| ||||||||| || | ||  |||||||||| ||||||||||||  |||||| ||||| ||||||    
T  32741801 tttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgttcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 39865184 - 39865420
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgt 116  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  39865184 agaatttagtactgatgatgacagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataattgttgt 39865283  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||    
T  39865284 gcctttgaatattgaaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcattt 39865383  T
Q  215 atttattgactatttactgttccttatccagtgcccc 251  Q
    ||||| | |||||||| ||||||||||||||||||||    
T  39865384 atttaattactatttattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 29771000 - 29770766
Alignment:
Q  19 aatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgtgc 118  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||| | | ||||||| ||||||||||||||| |||||||||| ||||||||||| |||    
T  29771000 aatatagtactgatgattgcagagagataatatatagcagtcatatggtggtgtaaacagatggaatggaaaggacgcgtctctgtaataatggttatgc 29770901  T
Q  119 ctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttat 216  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||    
T  29770900 ctttgaatattgaaagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttat 29770801  T
Q  217 ttattgactatttactgttccttatccagtgcccc 251  Q
    ||| | |||||||| ||||||||||||||||||||    
T  29770800 ttaattactatttattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 4329834 - 4329599
Alignment:
Q  18 gaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaac-gcgtctctataataatggttgt 116  Q
    ||||||| || |||||||| |||||| || |||||||||| ||||| |||| |||||| | ||||||||||||| || |||| | ||| ||||| |||||    
T  4329834 gaatataatattgatgatgacagagaaataatagatagcaatcatatgattctgtaaacatatggaatggaaaggaccgcgtatgtatgataatagttgt 4329735  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
    ||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4329734 gcctttgagaattgaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctattt 4329635  T
Q  215 atttattgactatttactgttccttatccagtgccc 250  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4329634 atttattaactatttactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 30674443 - 30674557
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||| | ||||| |||||| ||||    
T  30674443 tttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgttctttatccggtgc 30674542  T
Q  249 ccctggttaacattg 263  Q
    ||| ||||| |||||    
T  30674543 ccccggttagcattg 30674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 9074699 - 9074598
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||| |||||||||||| ||||||| ||||| |||||| ||||    
T  9074699 tttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattgttctttatccggtgc 9074600  T
Q  249 cc 250  Q
    ||    
T  9074599 cc 9074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 29771299 - 29771360
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 219  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||  |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttattta 29771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 9914294 - 9914204
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttcctt 239  Q
    ||||||| ||||| |||||||| |||| ||||||||||||| |  | ||| |||||||||  |||||||||||  ||||||| ||||||||    
T  9914294 tttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgttcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 39864860 - 39864768
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||||| ||||||||  ||||| |||| |||||||||||||| ||||||  ||||||||| ||  |||| | || |||||||||||||||||    
T  39864860 ttttaattaattgacatagtttaca-tttatttgagatgaattaaatgagattcatttatttaatgcatattaattg-tccttatccagtgcccc 39864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 26759439 - 26759207
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgt 116  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26759439 agaatatagtactgatgatggcagagagataatagataacagtcatatggttgtgtaaacagatggaatggaaaggacgcgtctctataataatggttgt 26759340  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
    ||||||||||||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  26759339 gcctttgaatattaaaagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccattt 26759240  T
Q  215 atttattgactatttactgttccttatccagtg 247  Q
    ||||| | |||||||| ||||||||||||||||    
T  26759239 atttaattactatttattgttccttatccagtg 26759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 146822 - 146644
Alignment:
Q  67 ttgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgtgcctttgaatattgaaa-gagtattgaatata--ttttattatttttaat 163  Q
    |||| |||| ||||||||||||||  |||||| | ||||||||| || ||| ||||||  ||||||| ||||||||||||||  |||||||| |||||||    
T  146822 ttgtataaacagatggaatggaaatgacgcgtttgtataataatagtcgtggctttgagaattgaaaagagtattgaatatagtttttattaattttaat 146723  T
Q  164 tagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatc 242  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || ||||||| ||||| |||||    
T  146722 tagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatttattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 308406 - 308301
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| ||||| |||||| ||||    
T  308406 tttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgttcattatccggtgc 308307  T
Q  249 ccctgg 254  Q
    ||||||    
T  308306 ccctgg 308301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 186776 - 186682
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| |||||||||||  ||||||| ||||||||||||    
T  186776 tttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgttccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 187049 - 187140
Alignment:
Q  160 taattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    |||||||||||| |||||  |||||||||| || | || ||| ||||||  |||||||||||| ||||||| | || |||||||||||||||    
T  187049 taattagttgacttatatctcactttaatttaggtaaactaattgagattcatttatttattgcctatttattatttcttatccagtgcccc 187140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 147190 - 147251
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 219  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| || ||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatattta 147251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 23566775 - 23567011
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgt 116  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||| | |||| |||| ||||||||||||||| | |||||||||||||||| |||||    
T  23566775 agaatttagtactgatgatggcagatagataatagatagcagtcatatggttgtttaaacagatggaatggaaaggatgcgtctctataataattgttgt 23566874  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||    
T  23566875 gcctttgaatattgaaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcattt 23566974  T
Q  215 atttattgactatttactgttccttatccagtgcccc 251  Q
    ||||| | |||||||| ||||||||||||||||||||    
T  23566975 atttaattactatttattgttccttatccagtgcccc 23567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 39737610 - 39737844
Alignment:
Q  17 agaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||| || |||||||||| ||||||||||    
T  39737610 agaatatagtactgatgatggcagagagataatagatagcagtcatatggttgtgtaaacagatggaatggaaaggacacgtctctatattaatggttgt 39737709  T
Q  117 gcctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattt 214  Q
     ||||| |||||||||||| |||||||||||  ||||||||||||||||||||| |||||||||| | ||||||||||||||||||| | ||||| ||||    
T  39737710 acctttaaatattgaaagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctattt 39737809  T
Q  215 atttattgactatttactgttccttatccagtgcc 249  Q
    ||||| | |||||||| ||||||||||||||||||    
T  39737810 atttaattactatttattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 45395560 - 45395411
Alignment:
Q  279 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  379 caccccatgttttcc-ttccaccgcttgatgtccacaggttctgctcgtt 427  Q
    || |||||||||||| |||||||||||||||||||||  ||| |||||||    
T  45395460 catcccatgttttcctttccaccgcttgatgtccacaaattccgctcgtt 45395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 785785 - 785883
Alignment:
Q  150 ttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    |||||| ||||||||| |||  |||| ||||||||| ||| || | ||| |||||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  785785 ttattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgttccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 30385749 - 30385836
Alignment:
Q  137 tattgaatatat--tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 222  Q
    ||||||||||||  ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||| ||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattg 30385836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 39737293 - 39737232
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 219  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttattta 39737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 23566522 - 23566432
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 249  Q
    ||||||||||||||||||  ||||| |||| |||||||||||||||| ||||  ||||||||| ||  |||| | |||| |||||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaatgcatattaattgtt-cttatccagtgcc 23566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 53153869 - 53153941
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttatt 221  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||  || ||||||||    
T  53153869 tttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctatttatt 53153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  329 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 395  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 53153590 - 53153517
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 230  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||| ||| |||||||||||| |||||||    
T  53153590 ttttaattagttgacttatatctcactttaatttagataaaccaattgaaatccatttatttattgcctattta 53153517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 12639608 - 12639843
Alignment:
Q  18 gaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgtctctataataatggttgtg 117  Q
    |||||||||| |||||||| ||||||||| |||||||||| ||||| | ||||||||| ||||||||||||||| | |||||||||||||||| |  ||     
T  12639608 gaatatagtattgatgatgacagagagataatagatagcaatcatatggttgtgtaaacagatggaatggaaaggatgcgtctctataataatagacgta 12639707  T
Q  118 cctttgaatattgaaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaattta 215  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  12639708 cctttgagaattgaaagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccattta 12639807  T
Q  216 tttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||| ||||||| ||||||||||||||| ||||    
T  12639808 tttattgcctatttattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 38147513 - 38147357
Alignment:
Q  131 aaagagtattgaatata--ttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 228  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38147513 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactatt 38147414  T
Q  229 tactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 278  Q
    ||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147413 tactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

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Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 28103972 - 28103806
Alignment:
Q  80 tggaatggaaagaacgcgtctctataataatggttgtgcctttgaatattg-aaagagtattgaatata--ttttattatttttaattagttgacatata 176  Q
    |||||||||||| |||||| | ||||||||| || ||||||||||  |||| |||||||||||||||||  |||||||||||||||||||||||||||||    
T  28103972 tggaatggaaaggacgcgtttgtataataatagtcgtgcctttgagaattggaaagagtattgaatatagcttttattatttttaattagttgacatata 28103873  T
Q  177 ttacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  28103872 ttacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcc 28103806  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 917772 - 917683
Alignment:
Q  155 atttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 43012856 - 43012754
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  43012856 tttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgttccttatccagtgc 43012757  T
Q  249 ccc 251  Q
    |||    
T  43012756 ccc 43012754  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 918776 - 918696
Alignment:
Q  18 gaatatagtactgatgatggcagagagatgatagatagcagtcatacgattgtgtaaatagatggaatggaaagaacgcgt 98  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||| |||||||| || ||||||||||||||| ||||||    
T  918776 gaatatagtactgatgatggcagatggataatagatagcagtcatatgattgtgtcaacagatggaatggaaaggacgcgt 918696  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 23643504 - 23643431
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 222  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  23643504 tttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattg 23643431  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 12639273 - 12639208
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 222  Q
    ||||||||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattg 12639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 28104360 - 28104421
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 219  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 919115 - 919176
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 219  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||  |||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttattta 919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 54714887 - 54714989
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| ||||||||| || | |||| ||||||||||||| |||| ||| |||||| ||| |||||||||||| ||||||  | ||| ||||||| |||    
T  54714887 tttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctattttttattctttatccaatgc 54714986  T
Q  249 ccc 251  Q
    |||    
T  54714987 ccc 54714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 43013130 - 43013224
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || |||||||||||||||    
T  43013130 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgcccc 43013224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 12629902 - 12629834
Alignment:
Q  183 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    |||||||||| | ||| | || ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629902 tttaattgaggtaaatcatgtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 25163491 - 25163430
Alignment:
Q  183 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 244  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| |||||||||||||    
T  25163491 tttaattgaggtaaataaagtaagatctattcatttattgtctatttaatgttccttatcca 25163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 20052 - 19902
Alignment:
Q  278 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 377  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  378 tcaccccatgttttcc-ttccaccgcttgatgtccacaggttctgctcgtt 427  Q
    ||| |||||||||||| |||||||||||||||||||||  ||| |||||||    
T  19952 tcatcccatgttttcctttccaccgcttgatgtccacaaattccgctcgtt 19902  T

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Target: chr6 (Bit Score: 100; Significance: 3e-49; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 279 - 427
Target Start/End: Complemental strand, 17922991 - 17922842
Alignment:
Q  279 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  379 caccccatgtttt--ccttccaccgcttgatgtccacaggttctgctcgtt 427  Q
    || ||||||||||  | |||||||||||||||||||||  ||| |||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttgatgtccacaaattccgctcgtt 17922842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 149 - 249
Target Start/End: Complemental strand, 8700990 - 8700890
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 248  Q
    ||||||| |||||||||||| | |||| ||||||||||||| || | ||| |||||||||| || ||||||||| ||||||| |||||||||||| ||||    
T  8700990 tttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgttccttatccggtgc 8700891  T
Q  249 c 249  Q
    |    
T  8700890 c 8700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 12307315 - 12307388
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 222  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  12307315 tttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattg 12307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 605066 - 604984
Alignment:
Q  162 attagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 244  Q
    ||||||||| |||| ||| ||||||||| || | ||| |||||||||| |||||||||||| ||||||| |||||||||||||    
T  605066 attagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttattgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 7727395 - 7727468
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 222  Q
    ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||||||||||||||||    
T  7727395 tttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattg 7727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 12307064 - 12306970
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||||||||||| |||||  |||||||||| || | ||| || | ||||  |||||||||||| ||||||| | || |||||||||||||||    
T  12307064 ttttaattagttgacttatatctcactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgcccc 12306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 8701263 - 8701357
Alignment:
Q  157 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    ||||||||||||||| |||||  |||||||||| |  | ||| || ||||||  |||||||||||| ||||||| | || |||| ||||||||||    
T  8701263 ttttaattagttgacttatatatcactttaatttaagtaaatcaattgagattcatttatttattgcctatttattatttcttaaccagtgcccc 8701357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 40888886 - 40888792
Alignment:
Q  149 tttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 243  Q
    ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||| ||||| |||||| ||||| ||||| | |||| |||||||    
T  40888886 tttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattgtttcttatcc 40888792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 23270014 - 23269946
Alignment:
Q  183 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 251  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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