View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1961_low_8 (Length: 404)
Name: NF1961_low_8
Description: NF1961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1961_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 113 - 388
Target Start/End: Complemental strand, 41163048 - 41162774
Alignment:
| Q |
113 |
ttcttgtgtaatctactcctttaattggactagtttccacnnnnnnnnagatatatttggatttagtttattgaaaatgtatttgtgtcatattatttct |
212 |
Q |
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| T |
41163048 |
ttcttgtgtaatctattcctttaattggatcagtttccacttttttt-agatatatttggatttagtttatcgaaaatgtatttgtgccgtattatttct |
41162950 |
T |
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| Q |
213 |
tagaattacacgtattgcttcctaccactgtgggaataattaaccaagacattttatgtgcggtagaatatgaattgtagtaacaacatattacaaagac |
312 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41162949 |
tagaattacacgtattgcttactaccactctgggaataattaaccaagatattttatgtgcggtagaatatgaattgtagtaacaacatattacaaagac |
41162850 |
T |
|
| Q |
313 |
attgctgcaatatacaaagatgaaagatcggaattcaaaccccaatttttctatttattcattttaatgacaaaaa |
388 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41162849 |
attgctgcaatatacaaagatgaaagattggaattcaaaccccaatttttctatttattcattttaatgacaaaaa |
41162774 |
T |
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