View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19620_high_6 (Length: 303)
Name: NF19620_high_6
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 9443443 - 9443167
Alignment:
| Q |
13 |
aatatagtaatgcatgtttgatatcacagtgtgttacataattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgc |
112 |
Q |
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| T |
9443443 |
aatatagtaatgcatgtttgatatcacagtgtgttacgtaattttgcaaaagttacacgcaaatttgctatttgaatgacaaaacaaaatacaagtgtgc |
9443344 |
T |
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| Q |
113 |
tatcaccatcatcgtgagccactgtgattttgcaaaagctacactgcgaagtttgtctcattttaataaaacagtaaagaagt----nnnnnnnnnnnnn |
208 |
Q |
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| T |
9443343 |
tatcaccatcaccgtgagccactgtgattttgcaaaagctacactgcgaagtttgcctcattttaataaaacagtaaagaagtaaaaaaaaatatatata |
9443244 |
T |
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| Q |
209 |
nnnnntaacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9443243 |
tatattaacctcatgcttagcttcttgcttaacagcttcccaaatagggtcagacacgtctaagatggattcaggat |
9443167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 35069152 - 35069181
Alignment:
| Q |
127 |
tgagccactgtgattttgcaaaagctacac |
156 |
Q |
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| T |
35069152 |
tgagccactgtgattttgcaaaagctacac |
35069181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 51617345 - 51617381
Alignment:
| Q |
121 |
tcatcgtgagccactgtgattttgcaaaagctacact |
157 |
Q |
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| T |
51617345 |
tcatcgttagccagtgtgattttgcaaaagctacact |
51617381 |
T |
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