View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19620_low_10 (Length: 271)
Name: NF19620_low_10
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 11119686 - 11119442
Alignment:
| Q |
19 |
gaagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtg |
118 |
Q |
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| T |
11119686 |
gaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaagggtgtagtg |
11119587 |
T |
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| Q |
119 |
gcggatgaagttgaaggcaatgttggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgaca |
218 |
Q |
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| T |
11119586 |
gcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgaca |
11119487 |
T |
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| Q |
219 |
gtgaagaagagaggatggctggggttgatgataggtttgatgatg |
263 |
Q |
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| T |
11119486 |
gtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 42 - 244
Target Start/End: Complemental strand, 12206172 - 12205970
Alignment:
| Q |
42 |
ttgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaatgt |
141 |
Q |
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| T |
12206172 |
ttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaatgt |
12206073 |
T |
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| Q |
142 |
tggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggctggg |
241 |
Q |
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| T |
12206072 |
tggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggctggg |
12205973 |
T |
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| Q |
242 |
gtt |
244 |
Q |
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| T |
12205972 |
gtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 32741389 - 32741144
Alignment:
| Q |
20 |
aagtgcgatgttgaattgtatattgaacctaagctgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtgg |
119 |
Q |
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| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
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| Q |
120 |
cggatgaagttgaaggcaatgttggtgaagcagacagtgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacag |
219 |
Q |
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| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatag |
32741190 |
T |
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| Q |
220 |
tgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
265 |
Q |
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| T |
32741189 |
tgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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