View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19620_low_11 (Length: 268)
Name: NF19620_low_11
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 25065116 - 25064859
Alignment:
| Q |
1 |
tggatcctcctcgtgaacacacctccaagaacacattcttatgtcnnnnnnnttgctacaccattagtttacacatctgataccttttcagtgccttgag |
100 |
Q |
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| T |
25065116 |
tggatcctcctcgtgaacacacctccaagaacacattcttatgtcaaaaaaattgctacaccattagtttacacatctgataccttttcagtgccttgag |
25065017 |
T |
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| Q |
101 |
tatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctcttcaaaacaatacaccatctgatcataacattgagaagatagagaaaat |
200 |
Q |
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| T |
25065016 |
tatgttaatgattaatccatttatcttccttgaactgatgcagtgcttctcttcaaaacaatacaccatctgatcataacattgagaagatagagaaaat |
25064917 |
T |
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| Q |
201 |
tatttcaactcataagttatgggatgcagattatctacctttcaattctctccctttg |
258 |
Q |
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| T |
25064916 |
tatttcaactcataagttatgggatgcagattatctacctttcaattctctctctttg |
25064859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 25086398 - 25086307
Alignment:
| Q |
155 |
aaaacaatacaccatctgatcataacattgagaagatagagaaaattatttcaactcataagttatgggatgcagattatctacctttcaat |
246 |
Q |
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| T |
25086398 |
aaaacaagtcaccatctgatcataacattgagaagatagagaaaactatttcaactcagaagttatgggatgcatattatctacctttcaat |
25086307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 25440610 - 25440521
Alignment:
| Q |
111 |
attaatccatttatcttccttgaactgatgcagtgcttctcttc--aaaacaataca-ccatctgatcataacattgagaagatagagaa |
197 |
Q |
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| T |
25440610 |
attaatccatttgtcttccttcaactgatgcagtgcttctcttcaaaaaacaatacacccttttgatcataacagtgagaaactagagaa |
25440521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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