View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19620_low_12 (Length: 267)
Name: NF19620_low_12
Description: NF19620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19620_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 13484151 - 13483906
Alignment:
| Q |
20 |
ataaggttatcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatgataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13484151 |
ataaggttatcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatgataa |
13484052 |
T |
|
| Q |
120 |
tgaattataaatttctaatt----tatgaaataacaaactattaataagttaattgtttgcctgtgtgatttattagtggagttcactcttgtatttata |
215 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13484051 |
tgaattataaatttctaattaatgtatgaaataacaaactattaataagttaattgtttgcctgtgtgatttattagtggagttcactcttgtatttata |
13483952 |
T |
|
| Q |
216 |
ggaactgaagatgtattgtttagactttggatgatgatgatgatgt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13483951 |
ggaactgaagatgtattgtttagactttggatgatgatgatgatgt |
13483906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 13489876 - 13489649
Alignment:
| Q |
20 |
ataaggttatcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatgataa |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13489876 |
ataaagttatcagaatctgtaactaaagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatgataa |
13489777 |
T |
|
| Q |
120 |
tgaattataaatttctaatt----tatgaaataacaaactattaataagttaattgtttgcctgtgtgatttattagtggagttcactcttgtatttata |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13489776 |
tgaattataaatttctaattaatgtatgaaataacaaactattaagaagttaattgtttgcctgtgtgatttattagtggagttcactcttgtatttata |
13489677 |
T |
|
| Q |
216 |
ggaactgaagatgtattgtttagacttt |
243 |
Q |
| |
|
|||| |||||||||| ||||||||||| |
|
|
| T |
13489676 |
ggaaaagaagatgtatagtttagacttt |
13489649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 13514828 - 13514733
Alignment:
| Q |
20 |
ataaggttatcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13514828 |
ataaggttatcagaatctgtaactagagctttgtaaagtgtagcaggagctacattagaggtggtttcatcctcaaaattgaacacacccatgatg |
13514733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 13508567 - 13508480
Alignment:
| Q |
29 |
tcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
116 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
13508567 |
tcagcatccgtaacaagagctttgtaaagtgtagcaggagctacaatagaggtggtttcatcctcaaaattgaaaacacccattatga |
13508480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 13500858 - 13500762
Alignment:
| Q |
20 |
ataaggttatcagaatctgtaactagagctttgtaaagtctagcaggagctacaatagatgtggtttcatcctcaaagttgaagacacccatgatga |
116 |
Q |
| |
|
|||||||| |||| ||||||||| | |||||||| |||| |||| |||||||||| ||| |||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
13500858 |
ataaggttgtcagcatctgtaacaaaagctttgtgaagtgtagctggagctacaacagaggtggtttcttcctcaaaattgatgacacccatgatga |
13500762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 13508393 - 13508345
Alignment:
| Q |
192 |
gtggagttcactcttgtatttataggaactgaagatgtattgtttagac |
240 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
13508393 |
gtggagttgagtctagtatttatagtaactgaagatgtattgtttagac |
13508345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 13514654 - 13514618
Alignment:
| Q |
207 |
gtatttataggaactgaagatgtattgtttagacttt |
243 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
13514654 |
gtatttataggaactgaagttgtattatttagacttt |
13514618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University